Variant report

Variant	rs9496644
Chromosome Location	chr6:143814807-143814808
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143809422..143811493-chr6:143814046..143815770,2	K562	blood:
2	chr6:143804354..143808777-chr6:143809039..143815242,7	K562	blood:
3	chr6:143795819..143798252-chr6:143812938..143815043,2	K562	blood:

Variant related genes	Relation type
ENSG00000034693	Chromatin interaction
ENSG00000229036	Chromatin interaction

Extended variants
information (count: 70 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs1138410	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs12215708	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs12215709	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs17072606	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2432871	0.81[EUR][1000 genomes]
rs2432872	0.81[EUR][1000 genomes]
rs2432873	0.87[EUR][1000 genomes]
rs2473454	0.87[EUR][1000 genomes]
rs2496586	0.80[EUR][1000 genomes]
rs2496587	0.82[EUR][1000 genomes]
rs2496588	0.81[EUR][1000 genomes]
rs2496589	0.82[EUR][1000 genomes]
rs2496591	0.87[EUR][1000 genomes]
rs2496594	0.91[EUR][1000 genomes]
rs2496595	0.89[EUR][1000 genomes]
rs2496596	0.91[EUR][1000 genomes]
rs2496597	0.91[EUR][1000 genomes]
rs4605902	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs55865962	0.90[EUR][1000 genomes]
rs56336947	0.91[EUR][1000 genomes]
rs6570561	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs6915676	0.91[EUR][1000 genomes]
rs6915856	0.91[EUR][1000 genomes]
rs6921292	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs6921520	0.91[EUR][1000 genomes]
rs6921706	0.91[EUR][1000 genomes]
rs72988621	0.91[EUR][1000 genomes]
rs72988635	0.90[EUR][1000 genomes]
rs7740441	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs7744361	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs7755370	0.90[EUR][1000 genomes]
rs7761741	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs9321907	0.91[EUR][1000 genomes]
rs9321908	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs9321909	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs9321910	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs9321911	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs9321912	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs9484744	0.91[EUR][1000 genomes]
rs9484745	0.91[EUR][1000 genomes]
rs9484746	0.91[EUR][1000 genomes]
rs9484747	0.91[EUR][1000 genomes]
rs9484748	0.87[EUR][1000 genomes]
rs9484749	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs9484750	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs9484752	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs9496616	0.91[EUR][1000 genomes]
rs9496617	0.90[EUR][1000 genomes]
rs9496618	0.91[EUR][1000 genomes]
rs9496619	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs9496620	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs9496621	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs9496622	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs9496627	0.90[EUR][1000 genomes]
rs9496628	0.89[EUR][1000 genomes]
rs9496629	0.90[EUR][1000 genomes]
rs9496630	0.84[EUR][1000 genomes]
rs9496631	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs9496632	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs9496633	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs9496634	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs9496635	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs9496636	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs9496637	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs9496638	0.80[EUR][1000 genomes]
rs9496639	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs9496640	0.90[EUR][1000 genomes]
rs9496642	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs9496643	1.00[CEU][hapmap];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv965776	chr6:143811602-143816945	Strong transcription Weak transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9496644	ADAT2	cis	Esophagus Muscularis	GTEx

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143772600-143832000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:143772800-143815000	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr6:143772800-143821200	Weak transcription	Psoas Muscle	Psoas
4	chr6:143773000-143815000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr6:143773000-143815000	Weak transcription	Colonic Mucosa	Colon
6	chr6:143773200-143827000	Weak transcription	Brain Germinal Matrix	brain
7	chr6:143773400-143815000	Weak transcription	A549	lung
8	chr6:143773400-143818200	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr6:143773400-143832000	Weak transcription	Fetal Brain Male	brain
10	chr6:143774400-143819400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr6:143779000-143818200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr6:143779200-143816800	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr6:143781000-143832000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr6:143783200-143818400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr6:143790200-143831600	Weak transcription	Esophagus	oesophagus
16	chr6:143790200-143831600	Weak transcription	Gastric	stomach
17	chr6:143793600-143819400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr6:143794400-143816000	Weak transcription	Brain Substantia Nigra	brain
19	chr6:143794600-143819400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr6:143794800-143817800	Weak transcription	HSMMtube	muscle
21	chr6:143795200-143827400	Weak transcription	Aorta	Aorta
22	chr6:143795800-143831800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr6:143797000-143826600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr6:143797400-143815200	Weak transcription	Fetal Lung	lung
25	chr6:143797400-143819200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr6:143797600-143831000	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr6:143798000-143817200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr6:143798200-143819400	Weak transcription	Fetal Thymus	thymus
29	chr6:143798400-143819400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr6:143798800-143819600	Weak transcription	Fetal Brain Female	brain
31	chr6:143798800-143821400	Weak transcription	HMEC	breast
32	chr6:143799000-143827000	Weak transcription	Brain Cingulate Gyrus	brain
33	chr6:143799400-143816600	Weak transcription	Fetal Muscle Leg	muscle
34	chr6:143799400-143819200	Weak transcription	Primary T helper cells PMA-I stimulated	--
35	chr6:143799600-143815200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr6:143799600-143815200	Weak transcription	Fetal Kidney	kidney
37	chr6:143799800-143815000	Weak transcription	Primary B cells from peripheral blood	blood
38	chr6:143800200-143815200	Weak transcription	Primary hematopoietic stem cells	blood
39	chr6:143800600-143818000	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr6:143800800-143831000	Weak transcription	Colon Smooth Muscle	Colon
41	chr6:143801000-143815000	Weak transcription	Brain Anterior Caudate	brain
42	chr6:143801000-143815000	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr6:143801200-143819400	Weak transcription	Dnd41	blood
44	chr6:143802200-143818600	Weak transcription	Primary T helper cells fromperipheralblood	blood
45	chr6:143803400-143816000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr6:143803600-143815000	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr6:143805200-143827800	Weak transcription	Fetal Heart	heart
48	chr6:143807600-143815200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr6:143808000-143818200	Weak transcription	Brain Angular Gyrus	brain
50	chr6:143808600-143818400	Weak transcription	Primary B cells from cord blood	blood

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