Variant report

Variant	rs7761741
Chromosome Location	chr6:143760271-143760272
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143758626..143760810-chr6:143770211..143772331,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000034693	Chromatin interaction
ENSG00000189007	Chromatin interaction
ENSG00000223203	Chromatin interaction

Extended variants
information (count: 72 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs1138410	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12215708	1.00[CEU][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12215709	1.00[CEU][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17072606	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2432871	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2432872	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2432873	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2473453	1.00[ASN][1000 genomes]
rs2473454	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2496586	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2496587	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2496588	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2496589	0.89[EUR][1000 genomes]
rs2496591	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2496594	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2496595	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2496596	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2496597	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4605902	1.00[CEU][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55865962	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56336947	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6570561	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6915676	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6915856	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6921292	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6921520	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6921706	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72988621	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72988635	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7740441	1.00[CEU][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7744361	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7755370	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9321907	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9321908	1.00[CEU][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9321909	1.00[CEU][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9321910	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9321911	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9321912	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9484744	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9484745	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9484746	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9484747	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9484748	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9484749	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9484750	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9484752	1.00[CEU][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496616	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496617	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496618	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496619	1.00[CEU][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496620	1.00[CEU][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496621	1.00[CEU][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496622	1.00[CEU][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496624	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496625	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496627	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496628	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9496629	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496630	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496631	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496632	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496633	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496634	0.96[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496635	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496636	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496637	0.96[CEU][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496638	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs9496639	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496640	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496642	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496643	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496644	1.00[CEU][hapmap];0.91[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7761741	ADAT2	cis	Esophagus Muscularis	GTEx

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143726800-143765000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:143733200-143770400	Weak transcription	A549	lung
3	chr6:143742400-143770800	Weak transcription	Spleen	Spleen
4	chr6:143742800-143770200	Weak transcription	Psoas Muscle	Psoas
5	chr6:143744400-143770800	Weak transcription	Left Ventricle	heart
6	chr6:143744800-143760800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr6:143745800-143770600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr6:143747400-143762800	Strong transcription	K562	blood
9	chr6:143747400-143770600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr6:143748000-143770400	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr6:143748200-143770600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr6:143748400-143762600	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr6:143748400-143762600	Weak transcription	Osteobl	bone
14	chr6:143748400-143770400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr6:143748400-143770600	Weak transcription	Fetal Kidney	kidney
16	chr6:143748400-143770600	Weak transcription	NHDF-Ad	bronchial
17	chr6:143748400-143770600	Weak transcription	NHLF	lung
18	chr6:143749400-143762800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr6:143749400-143770400	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr6:143749600-143770800	Weak transcription	Esophagus	oesophagus
21	chr6:143749800-143770400	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr6:143750800-143762800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
23	chr6:143750800-143770200	Weak transcription	Colon Smooth Muscle	Colon
24	chr6:143750800-143770200	Weak transcription	Thymus	Thymus
25	chr6:143751000-143770800	Weak transcription	HSMMtube	muscle
26	chr6:143751400-143761000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr6:143751600-143770200	Weak transcription	Fetal Intestine Small	intestine
28	chr6:143751600-143770400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr6:143751600-143770800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr6:143752000-143763000	Strong transcription	HUES64 Cell Line	embryonic stem cell
31	chr6:143752200-143762800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr6:143752200-143765000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr6:143752200-143765000	Weak transcription	Small Intestine	intestine
34	chr6:143752400-143770200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr6:143752600-143762600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
36	chr6:143752600-143766400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr6:143752600-143770600	Weak transcription	Brain Substantia Nigra	brain
38	chr6:143753000-143770200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr6:143753800-143761000	Weak transcription	Aorta	Aorta
40	chr6:143753800-143762600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr6:143753800-143770400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
42	chr6:143754000-143765000	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr6:143754000-143770200	Weak transcription	Hela-S3	cervix
44	chr6:143754200-143770400	Weak transcription	Stomach Smooth Muscle	stomach
45	chr6:143755000-143760600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr6:143755200-143770800	Weak transcription	Gastric	stomach
47	chr6:143755200-143770800	Weak transcription	Ovary	ovary
48	chr6:143755400-143770400	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr6:143755800-143761400	Weak transcription	Primary hematopoietic stem cells	blood
50	chr6:143756000-143770600	Weak transcription	Fetal Brain Female	brain

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