Variant report

Variant	rs2473813
Chromosome Location	chr1:210403737-210403738
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10863816	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11119444	0.82[EUR][1000 genomes]
rs12239420	0.96[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs1338298	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1473696	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2473814	0.90[EUR][1000 genomes]
rs2487903	0.83[ASN][1000 genomes]
rs2494183	0.85[ASN][1000 genomes]
rs2494184	0.85[ASN][1000 genomes]
rs2494185	0.94[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs2494186	0.96[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs4844981	0.90[EUR][1000 genomes]
rs677520	0.96[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs71571933	0.85[ASN][1000 genomes]
rs7534368	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs910109	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs910110	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9429839	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9430037	0.96[AFR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014034	chr1:209759648-210501731	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv8769	chr1:210403509-210564588	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	126 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210397200-210405000	Weak transcription	Stomach Smooth Muscle	stomach
2	chr1:210400200-210405000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr1:210401000-210404400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr1:210401200-210404400	Weak transcription	Colon Smooth Muscle	Colon

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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