Variant report

No.	Distal block	Cell Line	Cell type
1	chr1:210390833..210393119-chr1:210409019..210411738,2	MCF-7	breast:
2	chr1:210392144..210394653-chr1:210397259..210399571,2	K562	blood:
3	chr1:210391990..210392846-chr7:52182109..52182767,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000082497	Chromatin interaction

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10863816	0.94[EUR][1000 genomes]
rs11119444	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12239420	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1338298	0.94[EUR][1000 genomes]
rs1342135	0.80[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1473696	0.94[EUR][1000 genomes]
rs2473813	0.94[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs2473814	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2487904	0.91[ASN][1000 genomes]
rs2494180	0.91[ASN][1000 genomes]
rs2494186	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4844981	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs624270	0.92[ASN][1000 genomes]
rs654523	0.92[ASN][1000 genomes]
rs656312	0.90[ASN][1000 genomes]
rs660611	0.86[ASN][1000 genomes]
rs674513	0.87[ASN][1000 genomes]
rs677520	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7534368	0.93[EUR][1000 genomes]
rs845451	0.83[ASN][1000 genomes]
rs910109	0.88[EUR][1000 genomes]
rs910110	0.88[EUR][1000 genomes]
rs9429839	0.88[EUR][1000 genomes]
rs9430037	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014034	chr1:209759648-210501731	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210389000-210395600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

Quick Search: