Variant report

Variant	rs2494180
Chromosome Location	chr1:210380909-210380910
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11119444	0.98[ASN][1000 genomes]
rs12239420	0.89[ASN][1000 genomes]
rs1342135	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2487903	0.92[EUR][1000 genomes]
rs2487904	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2494183	0.90[EUR][1000 genomes]
rs2494184	0.91[EUR][1000 genomes]
rs2494185	0.91[ASN][1000 genomes]
rs2494186	0.90[ASN][1000 genomes]
rs4844981	0.88[ASN][1000 genomes]
rs624270	0.84[ASN][1000 genomes]
rs654523	0.83[ASN][1000 genomes]
rs656312	0.82[ASN][1000 genomes]
rs677520	0.90[ASN][1000 genomes]
rs71571933	0.87[EUR][1000 genomes]
rs9430037	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014034	chr1:209759648-210501731	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210380800-210381000	Enhancers	Rectal Mucosa Donor 31	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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