Variant report
Variant | rs2487904 |
---|---|
Chromosome Location | chr1:210381030-210381031 |
allele | C/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:2 , 50 per page) page:
1
No data |
No data |
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Variant related genes | Relation type |
---|---|
ENSG00000200972 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs11119444 | 0.98[ASN][1000 genomes] |
rs12239420 | 0.89[ASN][1000 genomes] |
rs1342135 | 0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs2487903 | 0.86[EUR][1000 genomes] |
rs2494180 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2494183 | 0.84[EUR][1000 genomes] |
rs2494184 | 0.85[EUR][1000 genomes] |
rs2494185 | 0.91[ASN][1000 genomes] |
rs2494186 | 0.90[ASN][1000 genomes] |
rs4844981 | 0.88[ASN][1000 genomes] |
rs624270 | 0.84[ASN][1000 genomes] |
rs654523 | 0.83[ASN][1000 genomes] |
rs656312 | 0.82[ASN][1000 genomes] |
rs677520 | 0.90[ASN][1000 genomes] |
rs71571933 | 0.83[EUR][1000 genomes] |
rs9430037 | 0.90[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1014034 | chr1:209759648-210501731 | Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 45 gene(s) | inside rSNPs | diseases |
No data |