Variant report
| Variant | rs11119444 |
|---|---|
| Chromosome Location | chr1:210390082-210390083 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:210381723..210383742-chr1:210389217..210391260,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10863816 | 0.86[EUR][1000 genomes] |
| rs12239420 | 0.89[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs1338298 | 0.86[EUR][1000 genomes] |
| rs1342135 | 0.99[ASN][1000 genomes] |
| rs1473696 | 0.85[EUR][1000 genomes] |
| rs2473813 | 0.82[EUR][1000 genomes] |
| rs2473814 | 0.83[EUR][1000 genomes] |
| rs2487904 | 0.98[ASN][1000 genomes] |
| rs2494180 | 0.98[ASN][1000 genomes] |
| rs2494185 | 0.90[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2494186 | 0.90[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4844981 | 0.88[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs624270 | 0.85[ASN][1000 genomes] |
| rs654523 | 0.85[ASN][1000 genomes] |
| rs656312 | 0.83[ASN][1000 genomes] |
| rs674513 | 0.80[ASN][1000 genomes] |
| rs677520 | 0.90[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs7534368 | 0.86[EUR][1000 genomes] |
| rs910109 | 0.82[EUR][1000 genomes] |
| rs910110 | 0.82[EUR][1000 genomes] |
| rs9429839 | 0.82[EUR][1000 genomes] |
| rs9430037 | 0.90[EUR][1000 genomes];0.92[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1014034 | chr1:209759648-210501731 | Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 45 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs11119444 | SERTAD4-AS1 | cis | Thyroid | GTEx |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:210389000-210395600 | Weak transcription | Foreskin Keratinocyte Primary Cells skin02 | Skin |
