Variant report

Variant	rs2474568
Chromosome Location	chr10:38383147-38383148
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:331)
CpG islands
(count:61)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:331 , 50 per page) page: 1 2 3 4 5 6 7

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SIN3A	chr10:38382981-38383655	GM12878	blood:	n/a	n/a
2	POLR2A	chr10:38383002-38383856	K562	blood:	n/a	n/a
3	ATF3	chr10:38383049-38383360	K562	blood:	n/a	n/a
4	GTF2F1	chr10:38383085-38383418	Hela-S3	cervix:	n/a	n/a
5	MAFF	chr10:38383092-38383286	K562	blood:	n/a	n/a
6	RCOR1	chr10:38383027-38383527	K562	blood:	n/a	n/a
7	PML	chr10:38382908-38383529	MCF-7	breast:	n/a	n/a
8	CTCF	chr10:38383080-38383230	HCPEpiC	choroid plexus:	n/a	n/a
9	CTCF	chr10:38383097-38383291	Spleen_OC	spleen:	n/a	n/a
10	USF1	chr10:38383005-38383332	K562	blood:	n/a	n/a
11	ELF1	chr10:38382939-38383395	HepG2	liver:	n/a	chr10:38382977-38382988
12	ESR1	chr10:38383096-38383402	ECC-1	luminal epithelium:	n/a	n/a
13	MAZ	chr10:38383055-38383987	K562	blood:	n/a	n/a
14	ZNF143	chr10:38382761-38383995	GM12878	blood:	n/a	chr10:38383773-38383791
15	JUN	chr10:38382732-38383490	K562	blood:	n/a	n/a
16	YY1	chr10:38382946-38383509	SK-N-SH_RA	brain:	n/a	n/a
17	FOSL2	chr10:38382821-38383494	A549	lung:	n/a	n/a
18	POLR2A	chr10:38382702-38383553	PFSK-1	brain:	n/a	n/a
19	MXI1	chr10:38382523-38384343	SK-N-SH	brain:	n/a	n/a
20	YY1	chr10:38383048-38383510	HCT-116	colon:	n/a	n/a
21	CHD2	chr10:38382998-38383387	Hela-S3	cervix:	n/a	n/a
22	MYBL2	chr10:38382864-38383404	HepG2	liver:	n/a	n/a
23	E2F6	chr10:38382829-38383972	A549	lung:	n/a	n/a
24	POLR2A	chr10:38382881-38383407	GM12878	blood:	n/a	n/a
25	POLR2A	chr10:38382798-38383578	PFSK-1	brain:	n/a	n/a
26	STAT3	chr10:38383113-38383331	MCF10A-Er-Src	breast:	n/a	n/a
27	POLR2A	chr10:38382843-38384039	MCF-7	breast:	n/a	n/a
28	CHD1	chr10:38383014-38383575	GM12878	blood:	n/a	n/a
29	MAX	chr10:38382814-38384251	HepG2	liver:	n/a	n/a
30	MAFK	chr10:38383081-38383312	HepG2	liver:	n/a	n/a
31	POLR2A	chr10:38382915-38383911	HEK293	kidney:	n/a	n/a
32	YY1	chr10:38383010-38383867	GM12878	blood:	n/a	n/a
33	TCF3	chr10:38383064-38383557	GM12878	blood:	n/a	n/a
34	YY1	chr10:38382965-38383524	SK-N-SH_RA	brain:	n/a	n/a
35	POLR2A	chr10:38382891-38383888	MCF10A-Er-Src	breast:	n/a	n/a
36	POLR2A	chr10:38382949-38383559	K562	blood:	n/a	n/a
37	TBL1XR1	chr10:38383031-38383316	K562	blood:	n/a	n/a
38	HCFC1	chr10:38382841-38383913	K562	blood:	n/a	n/a
39	SRF	chr10:38383073-38383240	GM12878	blood:	n/a	n/a
40	MAZ	chr10:38382954-38383875	GM12878	blood:	n/a	n/a
41	ZNF263	chr10:38383079-38384624	HEK293-T-REx	kidney:	n/a	chr10:38384250-38384259
42	YY1	chr10:38382967-38383556	ECC-1	luminal epithelium:	n/a	n/a
43	PML	chr10:38382961-38383170	GM12878	blood:	n/a	n/a
44	POLR2A	chr10:38382997-38384021	Hela-S3	cervix:	n/a	n/a
45	RCOR1	chr10:38383079-38383274	Hela-S3	cervix:	n/a	n/a
46	POLR2A	chr10:38382769-38383897	HL-60	blood:	n/a	n/a
47	POLR2A	chr10:38382927-38383903	Hela-S3	cervix:	n/a	n/a
48	POLR2A	chr10:38382819-38383629	A549	lung:	n/a	n/a
49	EP300	chr10:38383071-38383402	K562	blood:	n/a	n/a
50	POLR2A	chr10:38382896-38383887	GM19099	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:38383098-38383148	T-47D	breast:	n/a
2	chr10:38383098-38383148	AG04450	lung:	fetal
3	chr10:38383098-38383148	GM12891	blood:	n/a
4	chr10:38383098-38383148	CMK	blood:	n/a
5	chr10:38383098-38383148	HL-60	blood:	n/a
6	chr10:38383098-38383148	ProgFib	skin:	n/a
7	chr10:38383098-38383148	AoSMC	blood vessel:	n/a
8	chr10:38383098-38383148	Caco-2	colon:	n/a
9	chr10:38383098-38383148	Hepatocyte	liver:	n/a
10	chr10:38383098-38383148	HRCEpiC	kidney:	n/a
11	chr10:38383098-38383148	AG10803	skin:	n/a
12	chr10:38383098-38383148	HEK293	kidney:	embryo
13	chr10:38383098-38383148	GM19239	blood:	n/a
14	chr10:38383098-38383148	AG09309	skin:	n/a
15	chr10:38383098-38383148	HCF	heart:	n/a
16	chr10:38383098-38383148	HRPEpiC	eye:	n/a
17	chr10:38383098-38383148	A549	lung:	n/a
18	chr10:38383098-38383148	GM12878	blood:	n/a
19	chr10:38383098-38383148	HepG2	liver:	n/a
20	chr10:38383098-38383148	HAEpiC	amniotic membrane:	n/a
21	chr10:38383098-38383148	SK-N-SH_RA	brain:	n/a
22	chr10:38383098-38383148	HIPEpiC	eye:	n/a
23	chr10:38383098-38383148	Hela-S3	cervix:	n/a
24	chr10:38383098-38383148	K562	blood:	n/a
25	chr10:38383098-38383148	IMR90	lung:	fetal
26	chr10:38383098-38383148	GM12892	blood:	n/a
27	chr10:38383098-38383148	RPTEC	kidney:	n/a
28	chr10:38383098-38383148	NB4	blood:	n/a
29	chr10:38383098-38383148	H1-hESC	embryonic stem cell:	embryo
30	chr10:38383098-38383148	LNCaP	prostate:	n/a
31	chr10:38383098-38383148	MCF10A-Er-Src	breast:	n/a
32	chr10:38383098-38383148	U87	brain:	n/a
33	chr10:38383098-38383148	SK-N-SH	brain:	n/a
34	chr10:38383098-38383148	BE2_C	brain:	n/a
35	chr10:38383098-38383148	HUVEC	blood vessel:	n/a
36	chr10:38383098-38383148	NHBE	bronchial:	n/a
37	chr10:38383098-38383148	SAEC	small airway:	n/a
38	chr10:38383098-38383148	AG09319	gingival:	n/a
39	chr10:38383098-38383148	SKMC	muscle:	n/a
40	chr10:38383098-38383148	ovcar-3	ovarian:	n/a
41	chr10:38383098-38383148	HPAEpiC	pulmonary alveolar:	n/a
42	chr10:38383098-38383148	GM06990	blood:	n/a
43	chr10:38383098-38383148	PrEC	prostate:	n/a
44	chr10:38383098-38383148	SK-N-MC	brain:	n/a
45	chr10:38383098-38383148	HNPCEpiC	eye:	n/a
46	chr10:38383098-38383148	PFSK-1	brain:	n/a
47	chr10:38383098-38383148	Jurkat	blood:	n/a
48	chr10:38383098-38383148	HEEpiC	esophagus:	n/a
49	chr10:38383098-38383148	HMEC	breast:	n/a
50	chr10:38383098-38383148	AG04449	skin:	fetal

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:38145480..38148192-chr10:38381964..38384579,2	MCF-7	breast:
2	chr10:38299411..38301761-chr10:38382405..38384673,2	MCF-7	breast:
3	chr10:38299349..38301423-chr10:38382665..38385531,5	K562	blood:
4	chr10:38298279..38301657-chr10:38381478..38384966,6	MCF-7	breast:
5	chr10:38265225..38265930-chr10:38382980..38383712,3	K562	blood:
6	chr10:38298494..38301362-chr10:38382665..38385531,3	K562	blood:

No data

Variant related genes	Relation type
FXYD6P2	TF binding region
ZNF37A	TF binding region
ZNF37A	CpG island
FXYD6P2	CpG island
ENSG00000236514	Chromatin interaction
ENSG00000175395	Chromatin interaction
ENSG00000189180	Chromatin interaction
ENSG00000198105	Chromatin interaction
ENSG00000226447	Chromatin interaction

Extended variants
information (count: 106 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs11011452	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11011461	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1548255	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs176838	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.98[TSI][hapmap]
rs176876	0.81[ASN][1000 genomes]
rs176877	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs176879	0.94[ASW][hapmap];0.91[CHB][hapmap];0.85[CHD][hapmap];0.81[GIH][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs176880	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs176881	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs176882	0.81[ASN][1000 genomes]
rs176885	0.94[ASW][hapmap];0.91[CHB][hapmap];0.85[CHD][hapmap];0.81[GIH][hapmap];0.91[JPT][hapmap]
rs176886	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs176887	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs176889	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs1813028	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1854563	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1985707	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1998062	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2008449	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2021649	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2021650	0.91[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs2023299	0.80[ASN][1000 genomes]
rs2023351	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2178962	0.81[ASN][1000 genomes]
rs2180412	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2263162	0.81[ASN][1000 genomes]
rs2263163	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2263164	0.81[ASN][1000 genomes]
rs2384730	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2472173	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2472174	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2472175	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2472176	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2472177	0.94[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[CHD][hapmap];0.86[GIH][hapmap];0.91[JPT][hapmap];0.88[MEX][hapmap];0.98[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2472178	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2472180	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2472181	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2472183	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2474563	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2474565	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2474566	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2474567	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2474569	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2474570	0.94[ASW][hapmap];0.91[CHB][hapmap];0.85[CHD][hapmap];0.81[GIH][hapmap];0.91[JPT][hapmap]
rs2474571	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2474572	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2474573	1.00[ASW][hapmap];0.91[CHB][hapmap];0.84[CHD][hapmap];0.81[GIH][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs2474574	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2474575	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2474579	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2474580	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2474581	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2474584	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2474586	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2474587	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2474588	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2474590	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2474594	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2474595	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2474598	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2474599	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2504120	0.81[ASN][1000 genomes]
rs2504121	0.81[ASN][1000 genomes]
rs2504127	0.81[ASN][1000 genomes]
rs2504139	0.81[ASN][1000 genomes]
rs2504140	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2504141	0.94[ASW][hapmap];0.91[CHB][hapmap];0.85[CHD][hapmap];0.81[GIH][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs2504142	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2504143	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2504148	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2504149	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2505186	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2505187	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2505188	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2505189	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2505191	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2505193	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2505194	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2505195	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2505196	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2505197	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2505198	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2505202	0.88[ASW][hapmap];0.91[CHB][hapmap];0.81[CHD][hapmap];0.80[GIH][hapmap];0.83[JPT][hapmap]
rs2505203	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs2505237	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2505241	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2505248	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2505259	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2505260	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2800485	0.87[ASW][hapmap];0.96[CEU][hapmap];0.91[CHB][hapmap];0.81[CHD][hapmap];0.82[GIH][hapmap];0.87[JPT][hapmap];0.88[MEX][hapmap];0.88[TSI][hapmap]
rs2983343	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71491246	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7915062	0.94[ASW][hapmap];0.91[CHB][hapmap];0.85[CHD][hapmap];0.81[GIH][hapmap];0.91[JPT][hapmap]
rs9299760	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs932538	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9417297	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9418322	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895030	chr10:37715737-38674609	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1045684	chr10:37765361-38426204	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv540564	chr10:37765361-38426204	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1040704	chr10:37940024-38451917	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv1051121	chr10:38155991-38426204	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	nsv540565	chr10:38155991-38426204	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	nsv540566	chr10:38301001-38680127	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
8	nsv550419	chr10:38311777-38501654	Enhancers Strong transcription Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
9	nsv6465	chr10:38377662-38422125	Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs2474568	ZNF37A	cis	lymphoblastoid	seeQTL
rs2474568	HSD17B7P2	cis	Whole Blood	GTEx
rs2474568	LOC399744	cis	parietal	SCAN
rs2474568	HSD17B7P2	cis	parietal	SCAN
rs2474568	ZNF37A	cis	parietal	SCAN
rs2474568	ZNF25	cis	cerebellum	SCAN

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38382400-38384000	Active TSS	Brain Inferior Temporal Lobe	brain
2	chr10:38382400-38384000	Active TSS	Rectal Smooth Muscle	rectum
3	chr10:38382600-38383200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
4	chr10:38382600-38383200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr10:38382600-38383200	Flanking Active TSS	Liver	Liver
6	chr10:38382600-38383200	Flanking Active TSS	Dnd41	blood
7	chr10:38382600-38383400	Active TSS	Brain Germinal Matrix	brain
8	chr10:38382600-38383600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr10:38382600-38383800	Active TSS	ES-I3 Cell Line	embryonic stem cell
10	chr10:38382600-38383800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr10:38382600-38383800	Active TSS	Breast Myoepithelial Primary Cells	Breast
12	chr10:38382600-38383800	Active TSS	Colonic Mucosa	Colon
13	chr10:38382600-38383800	Active TSS	Duodenum Mucosa	Duodenum
14	chr10:38382600-38383800	Active TSS	Fetal Adrenal Gland	Adrenal Gland
15	chr10:38382600-38383800	Active TSS	Fetal Muscle Trunk	muscle
16	chr10:38382600-38383800	Active TSS	Fetal Thymus	thymus
17	chr10:38382600-38383800	Active TSS	Rectal Mucosa Donor 29	rectum
18	chr10:38382600-38383800	Active TSS	Thymus	Thymus
19	chr10:38382600-38384000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
20	chr10:38382600-38384000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr10:38382600-38384000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
22	chr10:38382600-38384000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr10:38382600-38384000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr10:38382600-38384000	Active TSS	Brain Angular Gyrus	brain
25	chr10:38382600-38384000	Active TSS	Brain Anterior Caudate	brain
26	chr10:38382600-38384000	Active TSS	Brain Hippocampus Middle	brain
27	chr10:38382600-38384000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
28	chr10:38382600-38384000	Active TSS	Fetal Brain Female	brain
29	chr10:38382600-38384000	Active TSS	Fetal Lung	lung
30	chr10:38382600-38384000	Active TSS	Right Atrium	heart
31	chr10:38382600-38384000	Active TSS	Right Ventricle	heart
32	chr10:38382600-38384000	Active TSS	Small Intestine	intestine
33	chr10:38382600-38384000	Active TSS	HUVEC	blood vessel
34	chr10:38382600-38384000	Active TSS	NH-A	brain
35	chr10:38382600-38384000	Active TSS	NHDF-Ad	bronchial
36	chr10:38382600-38384000	Active TSS	Osteobl	bone
37	chr10:38382600-38384200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr10:38382600-38384200	Flanking Active TSS	Primary B cells from cord blood	blood
39	chr10:38382600-38384200	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
40	chr10:38382600-38384200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr10:38382600-38384200	Active TSS	Aorta	Aorta
42	chr10:38382600-38384200	Active TSS	Fetal Intestine Large	intestine
43	chr10:38382600-38384200	Active TSS	Fetal Intestine Small	intestine
44	chr10:38382600-38384200	Active TSS	Ovary	ovary
45	chr10:38382600-38384200	Active TSS	Psoas Muscle	Psoas
46	chr10:38382600-38384400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
47	chr10:38382600-38384400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr10:38382600-38384400	Active TSS	Fetal Kidney	kidney
49	chr10:38382600-38384400	Active TSS	Pancreatic Islets	Pancreatic Islet
50	chr10:38382600-38384400	Active TSS	HSMMtube	muscle

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