Variant report

Variant	rs2505203
Chromosome Location	chr10:38471222-38471223
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1329786	0.80[AMR][1000 genomes]
rs1548255	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs176838	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs176879	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs176880	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs176885	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs176886	0.87[CHB][hapmap];0.87[JPT][hapmap]
rs176887	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs176889	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2021650	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[AFR][1000 genomes]
rs2023299	0.81[AFR][1000 genomes]
rs2144859	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2178962	0.82[AFR][1000 genomes]
rs2263162	0.81[AFR][1000 genomes]
rs2263164	0.81[AFR][1000 genomes]
rs2472150	0.81[CEU][hapmap]
rs2472175	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs2472177	1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[AFR][1000 genomes]
rs2474554	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2474564	0.81[AFR][1000 genomes]
rs2474565	0.95[CHB][hapmap];0.91[JPT][hapmap]
rs2474568	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs2474570	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2474572	0.81[AFR][1000 genomes]
rs2474573	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[AFR][1000 genomes]
rs2474596	0.80[AMR][1000 genomes]
rs2474610	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs2504127	0.82[AFR][1000 genomes]
rs2504139	0.82[AFR][1000 genomes]
rs2504141	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[AFR][1000 genomes]
rs2505192	0.86[JPT][hapmap]
rs2505193	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs2505194	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs2505196	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs2505202	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2505232	0.81[CEU][hapmap]
rs2505235	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs2505236	0.80[AMR][1000 genomes]
rs2505249	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs2505250	0.87[AMR][1000 genomes]
rs2505251	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs2505252	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2505258	0.80[AMR][1000 genomes]
rs2754353	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs2754495	0.85[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap]
rs2800485	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes]
rs2804641	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs2804675	0.83[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs496627	0.81[CEU][hapmap]
rs619739	0.82[CEU][hapmap]
rs626519	0.81[CEU][hapmap]
rs629577	0.82[CEU][hapmap]
rs645064	0.81[CEU][hapmap]
rs6482060	0.83[AMR][1000 genomes]
rs7915062	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895030	chr10:37715737-38674609	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv540566	chr10:38301001-38680127	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv550419	chr10:38311777-38501654	Enhancers Strong transcription Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv895032	chr10:38427708-38498909	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv895033	chr10:38432348-38537070	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv947857	chr10:38453951-38497640	Enhancers ZNF genes & repeats Weak transcription	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs2505203	HSD17B7P2	cis	Whole Blood	GTEx
rs2505203	ZNF37A///ZNF37B	Cis_1M	lymphoblastoid	RTeQTL
rs2505203	HSD17B7///HSD17B7P2///LOC730412	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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