Variant report
| Variant | rs2475207 |
|---|---|
| Chromosome Location | chr10:37714503-37714504 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-ANKRD30A-5 | chr10:37707165-37730322 | NONHSAT012779 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:3)
| rs_ID | r2[population] |
|---|---|
| rs2475201 | 1.00[AFR][1000 genomes];0.83[EUR][1000 genomes] |
| rs2475203 | 0.86[EUR][1000 genomes] |
| rs2505680 | 0.89[AFR][1000 genomes];0.94[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2750892 | chr10:37525594-37733381 | Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv975007 | chr10:37677218-37743945 | ZNF genes & repeats Enhancers Weak transcription Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 3 | nsv971862 | chr10:37694928-37716896 | Active TSS ZNF genes & repeats Enhancers Weak transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
mRNA abundance (count:2)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs2475207 | HSD17B7P2 | cis | Esophagus Muscularis | GTEx |
| rs2475207 | HSD17B7///HSD17B7P2///LOC730412 | Cis_1M | lymphoblastoid | RTeQTL |
Chromatin state (count:0 , 50 per page) page:
| No data |
