Variant report

Variant	rs2475544
Chromosome Location	chr13:29620405-29620406
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1358937	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1407438	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs226904	0.82[EUR][1000 genomes]
rs226905	0.82[EUR][1000 genomes]
rs2475539	0.82[EUR][1000 genomes]
rs2475540	0.82[EUR][1000 genomes]
rs2475541	0.82[EUR][1000 genomes]
rs2475542	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2475543	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2479759	0.82[EUR][1000 genomes]
rs2479760	0.82[EUR][1000 genomes]
rs2479764	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2479765	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2479766	1.00[AMR][1000 genomes]
rs2479767	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2479768	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2484464	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2484465	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2484466	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2987343	0.82[EUR][1000 genomes]
rs2987346	0.85[EUR][1000 genomes]
rs326509	0.82[EUR][1000 genomes]
rs326510	0.82[EUR][1000 genomes]
rs326511	0.82[EUR][1000 genomes]
rs4238114	0.82[EUR][1000 genomes]
rs4769660	0.82[EUR][1000 genomes]
rs4769669	0.89[AMR][1000 genomes]
rs60782582	0.82[EUR][1000 genomes]
rs7318626	0.82[EUR][1000 genomes]
rs9550433	0.82[EUR][1000 genomes]
rs9550434	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533835	chr13:29141132-29962069	Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	esv3406145	chr13:29616606-29917459	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:29606200-29623600	Weak transcription	Aorta	Aorta
2	chr13:29612400-29633600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr13:29618800-29620600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr13:29619200-29623200	Enhancers	Fetal Heart	heart
5	chr13:29620200-29620600	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr13:29620400-29620800	Enhancers	H1 Cell Line	embryonic stem cell
7	chr13:29620400-29621000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr13:29620400-29621400	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr13:29620400-29621400	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr13:29620400-29621400	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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