Variant report

Variant	rs326510
Chromosome Location	chr13:29612959-29612960
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs1358937	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1407438	1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1923518	1.00[YRI][hapmap]
rs226904	1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs226905	1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs226906	1.00[YRI][hapmap];0.96[EUR][1000 genomes]
rs226909	0.96[EUR][1000 genomes]
rs2475513	1.00[YRI][hapmap]
rs2475516	1.00[YRI][hapmap]
rs2475517	1.00[YRI][hapmap]
rs2475522	1.00[YRI][hapmap]
rs2475539	1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2475540	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2475541	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2475542	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2475543	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2475544	0.82[EUR][1000 genomes]
rs2475547	0.91[EUR][1000 genomes]
rs2479759	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2479760	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2479764	1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2479765	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2479766	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2479767	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2479768	1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2479772	1.00[YRI][hapmap];0.96[EUR][1000 genomes]
rs2479777	1.00[YRI][hapmap]
rs2479780	1.00[YRI][hapmap]
rs2479783	1.00[YRI][hapmap]
rs2484464	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2484465	1.00[CHB][hapmap];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2484466	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28434554	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2987343	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2987346	1.00[CHB][hapmap];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs326504	1.00[YRI][hapmap]
rs326509	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs326511	1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs326512	1.00[YRI][hapmap];0.96[EUR][1000 genomes]
rs326516	1.00[YRI][hapmap];0.96[EUR][1000 genomes]
rs326518	0.96[EUR][1000 genomes]
rs326522	0.91[EUR][1000 genomes]
rs326523	1.00[YRI][hapmap];0.96[EUR][1000 genomes]
rs4238114	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4325394	1.00[YRI][hapmap]
rs4768998	0.96[EUR][1000 genomes]
rs4769660	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4769669	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4769671	0.96[EUR][1000 genomes]
rs4769673	0.87[EUR][1000 genomes]
rs60782582	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7318626	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7325000	0.91[EUR][1000 genomes]
rs74041703	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs74045518	0.91[ASN][1000 genomes]
rs7984343	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9506076	1.00[CHB][hapmap];0.89[AMR][1000 genomes]
rs9508258	1.00[YRI][hapmap]
rs9550433	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9550434	1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9551587	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9551588	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9551589	0.91[ASN][1000 genomes]
rs9551590	0.91[ASN][1000 genomes]
rs9551591	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9551592	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533835	chr13:29141132-29962069	Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:29606200-29623600	Weak transcription	Aorta	Aorta
2	chr13:29609400-29613200	Weak transcription	Fetal Heart	heart
3	chr13:29612200-29614600	Weak transcription	Right Atrium	heart
4	chr13:29612400-29633600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links