Variant report

Variant	rs9506076
Chromosome Location	chr13:29604735-29604736
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:29596293..29599137-chr13:29603205..29604950,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000132938	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1407438	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1923518	1.00[CEU][hapmap]
rs226904	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes]
rs226905	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes]
rs226906	1.00[CEU][hapmap]
rs226909	1.00[CEU][hapmap]
rs2475539	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes]
rs2475540	0.89[AMR][1000 genomes]
rs2475541	0.89[AMR][1000 genomes]
rs2479759	0.89[AMR][1000 genomes]
rs2479760	0.89[AMR][1000 genomes]
rs2479764	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2479768	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2479772	1.00[CEU][hapmap]
rs2484465	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs28434554	0.89[AMR][1000 genomes]
rs2987343	0.89[AMR][1000 genomes]
rs2987346	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs326509	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes]
rs326510	1.00[CHB][hapmap];0.89[AMR][1000 genomes]
rs326511	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes]
rs326512	1.00[CEU][hapmap]
rs326516	1.00[CEU][hapmap]
rs326523	1.00[CEU][hapmap]
rs4238114	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes]
rs4769660	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes]
rs4769671	1.00[CEU][hapmap]
rs60782582	0.89[AMR][1000 genomes]
rs7325000	1.00[CEU][hapmap]
rs74041703	0.89[AMR][1000 genomes]
rs9550433	0.89[AMR][1000 genomes]
rs9550434	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9551587	0.89[AMR][1000 genomes]
rs9551588	0.89[AMR][1000 genomes]
rs9551591	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533835	chr13:29141132-29962069	Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:29585000-29609600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr13:29601000-29605800	Weak transcription	Aorta	Aorta
3	chr13:29602600-29607800	Enhancers	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links