Variant report

Variant	rs28434554
Chromosome Location	chr13:29589990-29589991
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1358937	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1407438	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs226904	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs226905	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs226906	0.91[EUR][1000 genomes]
rs226909	0.91[EUR][1000 genomes]
rs2475539	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2475540	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2475541	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2475542	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2475543	0.84[AFR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2475547	0.87[EUR][1000 genomes]
rs2479759	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2479760	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2479764	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2479765	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2479766	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2479767	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2479768	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2479772	0.91[EUR][1000 genomes]
rs2484464	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2484465	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2484466	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2987343	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2987346	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs326509	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs326510	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs326511	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs326512	0.91[EUR][1000 genomes]
rs326516	0.91[EUR][1000 genomes]
rs326518	0.91[EUR][1000 genomes]
rs326522	0.87[EUR][1000 genomes]
rs326523	0.91[EUR][1000 genomes]
rs4238114	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4768998	0.91[EUR][1000 genomes]
rs4769660	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4769669	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4769671	0.91[EUR][1000 genomes]
rs4769673	0.83[EUR][1000 genomes]
rs60782582	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7318626	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7325000	0.87[EUR][1000 genomes]
rs74041703	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74045518	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7984343	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9506076	0.89[AMR][1000 genomes]
rs9550433	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9550434	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9551587	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9551588	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9551589	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9551590	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9551591	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9551592	0.98[ASN][1000 genomes]
rs9578069	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533835	chr13:29141132-29962069	Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:29585000-29609600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr13:29589400-29599000	Weak transcription	Aorta	Aorta
3	chr13:29589600-29590000	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr13:29589600-29591200	Weak transcription	Fetal Heart	heart

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