Variant report
| Variant | rs9578069 |
|---|---|
| Chromosome Location | chr13:29605556-29605557 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:40)
| rs_ID | r2[population] |
|---|---|
| rs1358937 | 0.83[ASN][1000 genomes] |
| rs1407438 | 0.83[ASN][1000 genomes] |
| rs226904 | 0.85[ASN][1000 genomes] |
| rs226905 | 0.85[ASN][1000 genomes] |
| rs2475539 | 0.85[ASN][1000 genomes] |
| rs2475540 | 0.85[ASN][1000 genomes] |
| rs2475541 | 0.85[ASN][1000 genomes] |
| rs2475542 | 0.85[ASN][1000 genomes] |
| rs2475543 | 0.85[ASN][1000 genomes] |
| rs2479759 | 0.85[ASN][1000 genomes] |
| rs2479760 | 0.85[ASN][1000 genomes] |
| rs2479764 | 0.85[ASN][1000 genomes] |
| rs2479765 | 0.85[ASN][1000 genomes] |
| rs2479766 | 0.85[ASN][1000 genomes] |
| rs2479767 | 0.85[ASN][1000 genomes] |
| rs2479768 | 0.85[ASN][1000 genomes] |
| rs2484464 | 0.85[ASN][1000 genomes] |
| rs2484465 | 0.85[ASN][1000 genomes] |
| rs2484466 | 0.85[ASN][1000 genomes] |
| rs28434554 | 0.83[ASN][1000 genomes] |
| rs2987343 | 0.85[ASN][1000 genomes] |
| rs2987346 | 0.85[ASN][1000 genomes] |
| rs326509 | 0.85[ASN][1000 genomes] |
| rs326511 | 0.85[ASN][1000 genomes] |
| rs4238114 | 0.85[ASN][1000 genomes] |
| rs4769660 | 0.85[ASN][1000 genomes] |
| rs4769669 | 0.85[ASN][1000 genomes] |
| rs60782582 | 0.85[ASN][1000 genomes] |
| rs7318626 | 0.85[ASN][1000 genomes] |
| rs74041703 | 0.83[ASN][1000 genomes] |
| rs74045518 | 0.83[ASN][1000 genomes] |
| rs7984343 | 0.83[ASN][1000 genomes] |
| rs9550433 | 0.85[ASN][1000 genomes] |
| rs9550434 | 0.85[ASN][1000 genomes] |
| rs9551587 | 0.83[ASN][1000 genomes] |
| rs9551588 | 0.83[ASN][1000 genomes] |
| rs9551589 | 0.83[ASN][1000 genomes] |
| rs9551590 | 0.83[ASN][1000 genomes] |
| rs9551591 | 0.83[ASN][1000 genomes] |
| rs9551592 | 0.85[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv533835 | chr13:29141132-29962069 | Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 28 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:29585000-29609600 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
| 2 | chr13:29601000-29605800 | Weak transcription | Aorta | Aorta |
| 3 | chr13:29602600-29607800 | Enhancers | Fetal Heart | heart |
