Variant report

Variant	rs4769669
Chromosome Location	chr13:29620963-29620964
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1358937	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1407438	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1923518	0.89[AMR][1000 genomes]
rs226904	0.82[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs226905	0.82[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs226906	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs226909	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2475539	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2475540	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2475541	0.82[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2475542	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2475543	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2475544	0.89[AMR][1000 genomes]
rs2475547	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2479759	0.82[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2479760	0.82[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2479764	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2479765	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2479766	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2479767	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2479768	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2479769	0.89[AMR][1000 genomes]
rs2479772	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2484464	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2484465	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2484466	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28434554	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2987343	0.82[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2987346	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs326509	0.82[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs326510	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs326511	0.82[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs326512	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs326516	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs326518	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs326522	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs326523	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4238114	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4768998	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4769660	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4769671	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4769673	0.84[EUR][1000 genomes]
rs60782582	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7318626	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7325000	0.87[EUR][1000 genomes]
rs74041703	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs74045518	0.98[ASN][1000 genomes]
rs7984343	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9550433	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9550434	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9551587	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9551588	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9551589	0.98[ASN][1000 genomes]
rs9551590	0.98[ASN][1000 genomes]
rs9551591	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9551592	1.00[ASN][1000 genomes]
rs9578069	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533835	chr13:29141132-29962069	Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	esv3406145	chr13:29616606-29917459	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:29606200-29623600	Weak transcription	Aorta	Aorta
2	chr13:29612400-29633600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr13:29619200-29623200	Enhancers	Fetal Heart	heart
4	chr13:29620400-29621000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr13:29620400-29621400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr13:29620400-29621400	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr13:29620400-29621400	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr13:29620600-29621000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
9	chr13:29620600-29621400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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