Variant report

Variant	rs226909
Chromosome Location	chr13:29636113-29636114
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs1358937	0.96[EUR][1000 genomes]
rs1407438	1.00[CEU][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.96[EUR][1000 genomes]
rs1467690	1.00[JPT][hapmap]
rs167832	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs167834	0.84[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[ASN][1000 genomes]
rs191266	1.00[ASN][1000 genomes]
rs1923518	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes]
rs1927839	1.00[GIH][hapmap];1.00[JPT][hapmap]
rs226904	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs226905	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs226906	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2475513	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2475516	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2475517	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2475522	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2475527	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2475528	1.00[GIH][hapmap];1.00[JPT][hapmap]
rs2475539	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs2475540	0.96[EUR][1000 genomes]
rs2475541	0.96[EUR][1000 genomes]
rs2475542	0.96[EUR][1000 genomes]
rs2475543	0.96[EUR][1000 genomes]
rs2475547	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2479759	0.96[EUR][1000 genomes]
rs2479760	0.96[EUR][1000 genomes]
rs2479764	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs2479765	0.96[EUR][1000 genomes]
rs2479766	0.91[EUR][1000 genomes]
rs2479767	0.96[EUR][1000 genomes]
rs2479768	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.96[EUR][1000 genomes]
rs2479769	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2479772	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2479777	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2479780	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2479782	1.00[ASN][1000 genomes]
rs2479783	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2479788	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2484464	0.96[EUR][1000 genomes]
rs2484465	0.91[EUR][1000 genomes]
rs2484466	0.96[EUR][1000 genomes]
rs28434554	0.91[EUR][1000 genomes]
rs2987343	0.96[EUR][1000 genomes]
rs2987346	1.00[CEU][hapmap];0.88[TSI][hapmap];0.91[EUR][1000 genomes]
rs326504	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs326509	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes]
rs326510	0.96[EUR][1000 genomes]
rs326511	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs326512	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs326516	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs326518	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs326521	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs326522	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs326523	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs326525	0.82[ASN][1000 genomes]
rs4238114	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs4325394	1.00[JPT][hapmap]
rs4768998	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4769001	1.00[JPT][hapmap]
rs4769660	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs4769669	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4769671	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4769673	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4769679	1.00[GIH][hapmap];1.00[JPT][hapmap]
rs60782582	0.96[EUR][1000 genomes]
rs6490353	1.00[JPT][hapmap]
rs7318626	0.96[EUR][1000 genomes]
rs7325000	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7330567	1.00[JPT][hapmap]
rs74041703	0.91[EUR][1000 genomes]
rs7984343	0.87[EUR][1000 genomes]
rs9506076	1.00[CEU][hapmap]
rs9506090	1.00[ASN][1000 genomes]
rs9508258	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9550433	0.96[EUR][1000 genomes]
rs9550434	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs9551587	0.91[EUR][1000 genomes]
rs9551588	0.91[EUR][1000 genomes]
rs9551591	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533835	chr13:29141132-29962069	Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	esv3406145	chr13:29616606-29917459	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:29634200-29636800	Weak transcription	Fetal Heart	heart
2	chr13:29634400-29640000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr13:29634600-29640000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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