Variant report

Variant	rs1467690
Chromosome Location	chr13:29665256-29665257
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs167832	1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs167834	1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs191266	0.90[EUR][1000 genomes]
rs1923518	1.00[JPT][hapmap]
rs1927839	0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2149325	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs226906	1.00[JPT][hapmap]
rs226909	1.00[JPT][hapmap]
rs2475513	1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs2475516	1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs2475517	1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs2475522	1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs2475527	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2475528	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2475535	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2479772	1.00[JPT][hapmap]
rs2479777	1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs2479780	1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs2479783	1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs2479788	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2479797	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs326504	1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs326512	1.00[JPT][hapmap]
rs326516	1.00[JPT][hapmap]
rs326521	0.90[EUR][1000 genomes]
rs326523	1.00[JPT][hapmap]
rs4325394	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4769001	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4769671	1.00[JPT][hapmap]
rs4769679	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6490353	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6490354	1.00[YRI][hapmap];0.90[EUR][1000 genomes]
rs7325000	1.00[JPT][hapmap]
rs7330567	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9506090	0.90[EUR][1000 genomes]
rs9508258	1.00[JPT][hapmap];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533835	chr13:29141132-29962069	Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	esv3406145	chr13:29616606-29917459	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:29664600-29667600	ZNF genes & repeats	Liver	Liver
2	chr13:29664800-29665400	Enhancers	Left Ventricle	heart
3	chr13:29665000-29665400	Enhancers	Fetal Heart	heart

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