Variant report

Variant	rs2479797
Chromosome Location	chr13:29664512-29664513
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1467690	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2149325	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2475528	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2475535	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4325394	0.83[EUR][1000 genomes]
rs4769001	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4769679	0.83[EUR][1000 genomes]
rs6490353	0.83[EUR][1000 genomes]
rs7330567	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533835	chr13:29141132-29962069	Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	esv3406145	chr13:29616606-29917459	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:29657600-29665000	Weak transcription	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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