Variant report
| Variant | rs2475535 |
|---|---|
| Chromosome Location | chr13:29664114-29664115 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs1467690 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs167832 | 0.81[EUR][1000 genomes] |
| rs167834 | 0.81[EUR][1000 genomes] |
| rs191266 | 0.90[EUR][1000 genomes] |
| rs1927839 | 1.00[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs2149325 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2475513 | 0.90[EUR][1000 genomes] |
| rs2475516 | 0.90[EUR][1000 genomes] |
| rs2475517 | 0.90[EUR][1000 genomes] |
| rs2475522 | 0.90[EUR][1000 genomes] |
| rs2475527 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs2475528 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2479777 | 0.90[EUR][1000 genomes] |
| rs2479780 | 0.90[EUR][1000 genomes] |
| rs2479783 | 0.90[EUR][1000 genomes] |
| rs2479788 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs2479797 | 0.83[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs326504 | 0.90[EUR][1000 genomes] |
| rs326521 | 0.90[EUR][1000 genomes] |
| rs4325394 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4769001 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4769679 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6490353 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6490354 | 0.90[EUR][1000 genomes] |
| rs7330567 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9506090 | 0.90[EUR][1000 genomes] |
| rs9508258 | 0.90[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv533835 | chr13:29141132-29962069 | Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 28 gene(s) | inside rSNPs | diseases |
| 2 | esv3406145 | chr13:29616606-29917459 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:29657600-29665000 | Weak transcription | Fetal Heart | heart |
