Variant report

Variant	rs6490354
Chromosome Location	chr13:29681989-29681990
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1467690	1.00[YRI][hapmap];0.90[EUR][1000 genomes]
rs1927839	1.00[CHB][hapmap];0.85[YRI][hapmap];0.88[ASN][1000 genomes]
rs2149325	0.90[EUR][1000 genomes]
rs2475527	1.00[YRI][hapmap]
rs2475528	1.00[CHB][hapmap];1.00[YRI][hapmap];0.90[EUR][1000 genomes]
rs2475535	0.90[EUR][1000 genomes]
rs2479788	1.00[YRI][hapmap]
rs4325394	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4769001	1.00[YRI][hapmap];0.90[EUR][1000 genomes]
rs4769679	1.00[CHB][hapmap];1.00[YRI][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6490353	1.00[CHB][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7330567	1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs7981471	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533835	chr13:29141132-29962069	Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	esv3406145	chr13:29616606-29917459	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:29671200-29682600	Weak transcription	Aorta	Aorta
2	chr13:29675200-29682600	Weak transcription	Left Ventricle	heart
3	chr13:29677200-29697800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr13:29680000-29686800	Enhancers	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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