Variant report

Variant	rs7984343
Chromosome Location	chr13:29587920-29587921
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:29582537..29585037-chr13:29585795..29588247,2	K562	blood:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1358937	0.81[AFR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1407438	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AFR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1923518	1.00[CEU][hapmap]
rs226904	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs226905	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs226906	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs226909	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs2475539	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2475540	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2475541	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2475542	0.84[AFR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2475543	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2475547	0.83[EUR][1000 genomes]
rs2479759	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2479760	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2479764	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2479765	0.84[AFR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2479766	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2479767	0.84[AFR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2479768	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AFR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2479772	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs2484464	0.81[AFR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2484465	1.00[CHB][hapmap];0.81[AFR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2484466	0.81[AFR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28434554	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2987343	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2987346	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3011462	1.00[JPT][hapmap]
rs326509	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs326510	1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs326511	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs326512	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs326516	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs326518	0.87[EUR][1000 genomes]
rs326522	0.83[EUR][1000 genomes]
rs326523	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs4238114	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4768998	0.87[EUR][1000 genomes]
rs4769660	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4769669	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4769671	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs60782582	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7318626	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7325000	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs74041703	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74045518	1.00[ASN][1000 genomes]
rs9506076	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs9550433	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9550434	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AFR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9551587	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9551588	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9551589	1.00[ASN][1000 genomes]
rs9551590	1.00[ASN][1000 genomes]
rs9551591	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9551592	0.98[ASN][1000 genomes]
rs9578069	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533835	chr13:29141132-29962069	Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:29581200-29588200	Weak transcription	Left Ventricle	heart
2	chr13:29581200-29589000	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr13:29581200-29589400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr13:29583800-29589000	Enhancers	Fetal Heart	heart
5	chr13:29585000-29609600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr13:29587200-29589000	Weak transcription	Aorta	Aorta
7	chr13:29587600-29588000	Bivalent Enhancer	Fetal Brain Male	brain

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