Variant report

Variant	rs2478256
Chromosome Location	chr1:165503729-165503730
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs172259	0.87[AFR][1000 genomes]
rs176231	0.87[AFR][1000 genomes]
rs190799	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2254777	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2254782	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2433133	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2433135	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2433139	0.84[AFR][1000 genomes]
rs2478263	0.88[AFR][1000 genomes]
rs2485407	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs285425	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs285448	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs285459	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs285460	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs285465	0.87[AFR][1000 genomes]
rs285466	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs285477	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs406878	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165499400-165504200	Enhancers	Skeletal Muscle Male	skeletal muscle
2	chr1:165501600-165508600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr1:165502600-165508800	Weak transcription	Right Ventricle	heart
4	chr1:165502800-165508400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr1:165503600-165507000	Weak transcription	Fetal Muscle Leg	muscle
6	chr1:165503600-165509000	Weak transcription	Psoas Muscle	Psoas
7	chr1:165503600-165509000	Weak transcription	Right Atrium	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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