Variant report

Variant	rs2483577
Chromosome Location	chr10:116345504-116345505
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10885572	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10885573	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10885575	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10885584	0.89[ASN][1000 genomes]
rs11196779	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11196780	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11196781	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11196791	0.89[ASN][1000 genomes]
rs12569428	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2145894	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2247528	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2247624	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2475242	0.87[EUR][1000 genomes]
rs2483531	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2483564	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2483567	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2483571	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2483579	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2483580	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2483584	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2483585	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2483587	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2483588	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2483595	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2483596	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2483599	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2483612	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2497656	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2497661	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2497662	0.81[AMR][1000 genomes]
rs2497712	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2497717	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2497718	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2497719	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2497720	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2497721	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2497722	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2497723	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2901044	0.89[ASN][1000 genomes]
rs35078486	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4514325	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4568918	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56001223	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56086836	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7094292	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs867736	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs883511	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs883768	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116323400-116352000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr10:116323800-116352000	Weak transcription	Fetal Intestine Large	intestine
3	chr10:116335400-116351600	Weak transcription	Fetal Intestine Small	intestine
4	chr10:116336800-116359800	Weak transcription	Lung	lung
5	chr10:116336800-116360000	Weak transcription	Fetal Muscle Leg	muscle
6	chr10:116337000-116360200	Weak transcription	Esophagus	oesophagus
7	chr10:116337400-116352800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr10:116337600-116353000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr10:116337800-116350000	Weak transcription	Liver	Liver
10	chr10:116337800-116362600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr10:116338000-116345600	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr10:116341400-116356800	Weak transcription	Brain Anterior Caudate	brain
13	chr10:116342200-116359800	Weak transcription	Adipose Nuclei	Adipose
14	chr10:116343200-116346400	Enhancers	Fetal Heart	heart
15	chr10:116343400-116346000	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr10:116343800-116352000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr10:116344000-116346000	Enhancers	HSMMtube	muscle
18	chr10:116344400-116345600	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr10:116345000-116349800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr10:116345000-116382400	Weak transcription	HSMM	muscle
21	chr10:116345200-116346000	Enhancers	Right Atrium	heart
22	chr10:116345200-116346200	Genic enhancers	Left Ventricle	heart
23	chr10:116345200-116346200	Enhancers	Right Ventricle	heart
24	chr10:116345200-116346600	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr10:116345400-116345800	Enhancers	Psoas Muscle	Psoas

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