Variant report

Variant	rs2485492
Chromosome Location	chr13:38550242-38550243
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10161861	0.87[ASN][1000 genomes]
rs10219814	0.96[ASN][1000 genomes]
rs10467366	0.96[ASN][1000 genomes]
rs10467459	0.96[ASN][1000 genomes]
rs11147677	0.91[ASN][1000 genomes]
rs11617568	0.96[ASN][1000 genomes]
rs11618727	0.96[ASN][1000 genomes]
rs11619577	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11620108	0.87[ASN][1000 genomes]
rs12430942	0.96[ASN][1000 genomes]
rs12864438	0.96[ASN][1000 genomes]
rs1337647	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1572503	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1886201	0.96[ASN][1000 genomes]
rs1886202	0.96[ASN][1000 genomes]
rs1886203	0.96[ASN][1000 genomes]
rs1890125	0.96[ASN][1000 genomes]
rs2225872	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2245073	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2245074	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2255148	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2256009	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2256119	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2265458	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2485290	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2485491	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2785959	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4943546	0.87[ASN][1000 genomes]
rs4943550	0.87[ASN][1000 genomes]
rs4943552	0.96[ASN][1000 genomes]
rs61955036	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67142536	0.96[ASN][1000 genomes]
rs71439740	0.96[ASN][1000 genomes]
rs9315522	0.96[ASN][1000 genomes]
rs9315523	0.96[ASN][1000 genomes]
rs9315524	0.96[ASN][1000 genomes]
rs9315525	0.91[ASN][1000 genomes]
rs9315532	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9532136	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9532137	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9532142	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9548098	0.96[ASN][1000 genomes]
rs9548099	0.96[ASN][1000 genomes]
rs9548100	0.96[ASN][1000 genomes]
rs9548101	0.96[ASN][1000 genomes]
rs9548102	0.96[ASN][1000 genomes]
rs9548103	0.96[ASN][1000 genomes]
rs9548110	0.96[ASN][1000 genomes]
rs9548111	0.96[ASN][1000 genomes]
rs9548114	0.96[ASN][1000 genomes]
rs9548129	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9548136	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9548217	1.00[CHB][hapmap]
rs9594241	0.96[ASN][1000 genomes]
rs9594242	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915901	chr13:38199035-39032633	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv899996	chr13:38459224-38577056	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv899998	chr13:38480878-38582178	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38544200-38550800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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