Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-UFM1-11	chr13:38545279-38545391	NONHSAT033259

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11619577	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1337647	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1572503	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2225872	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2245073	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2245074	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2255148	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2256009	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2256119	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2265458	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2323665	0.92[ASN][1000 genomes]
rs2485491	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2485492	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2785959	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61955036	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71439747	0.81[ASN][1000 genomes]
rs9315530	0.95[ASN][1000 genomes]
rs9315532	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9532136	0.92[EUR][1000 genomes]
rs9532137	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9548117	0.95[ASN][1000 genomes]
rs9548121	0.95[ASN][1000 genomes]
rs9548129	0.92[EUR][1000 genomes]
rs9548136	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915901	chr13:38199035-39032633	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv899996	chr13:38459224-38577056	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv899998	chr13:38480878-38582178	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38539800-38546400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr13:38543200-38549200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr13:38544200-38550800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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