Variant report

Variant	rs9548117
Chromosome Location	chr13:38522731-38522732
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10219814	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10467366	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10467459	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11147677	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11617568	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11618727	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12430942	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12864438	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1415604	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1572503	0.82[AMR][1000 genomes]
rs1886201	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1886202	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1886203	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1890125	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2323665	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2485290	0.95[ASN][1000 genomes]
rs4943545	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4943546	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4943552	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs67142536	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs71439740	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs71439747	0.81[ASN][1000 genomes]
rs9315522	0.89[EUR][1000 genomes]
rs9315523	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9315524	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9315525	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9315530	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9532136	0.90[AMR][1000 genomes]
rs9532137	0.84[AMR][1000 genomes]
rs9548098	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9548099	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9548100	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9548101	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9548102	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9548103	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9548110	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9548111	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9548114	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9548121	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9594241	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9594242	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915901	chr13:38199035-39032633	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv899996	chr13:38459224-38577056	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv899998	chr13:38480878-38582178	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38519200-38523200	Weak transcription	Fetal Intestine Large	intestine
2	chr13:38520800-38524000	Weak transcription	Fetal Intestine Small	intestine

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