Variant report

Variant	rs9548121
Chromosome Location	chr13:38534201-38534202
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:38532991..38535686-chr13:38536250..38538995,2	K562	blood:
2	chr13:38515658..38518937-chr13:38531809..38534635,3	K562	blood:
3	chr13:38527701..38530140-chr13:38532657..38535418,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10219814	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10467366	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10467459	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11147677	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11617568	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11618727	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12430942	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12864438	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1415604	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1572503	0.83[AMR][1000 genomes]
rs1886201	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1886202	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1886203	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1890125	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2323665	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2485290	0.95[ASN][1000 genomes]
rs4943545	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4943546	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4943552	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs67142536	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs71439740	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs71439747	0.81[ASN][1000 genomes]
rs9315522	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9315523	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9315524	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9315525	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9315530	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9532136	0.91[AMR][1000 genomes]
rs9532137	0.86[AMR][1000 genomes]
rs9548098	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9548099	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9548100	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9548101	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9548102	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9548103	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9548110	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9548111	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9548114	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9548117	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9548129	0.80[AMR][1000 genomes]
rs9594241	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9594242	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915901	chr13:38199035-39032633	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv899996	chr13:38459224-38577056	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv899998	chr13:38480878-38582178	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38534000-38535000	Active TSS	K562	blood

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