Variant report

Variant	rs1572503
Chromosome Location	chr13:38550594-38550595
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10161861	0.91[ASN][1000 genomes]
rs10219814	1.00[ASN][1000 genomes]
rs10467366	1.00[ASN][1000 genomes]
rs10467459	1.00[ASN][1000 genomes]
rs11147677	0.96[ASN][1000 genomes]
rs11617568	1.00[ASN][1000 genomes]
rs11618727	1.00[ASN][1000 genomes]
rs11619577	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11620108	0.91[ASN][1000 genomes]
rs12430942	1.00[ASN][1000 genomes]
rs12864438	1.00[ASN][1000 genomes]
rs1337647	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1886201	1.00[ASN][1000 genomes]
rs1886202	1.00[ASN][1000 genomes]
rs1886203	1.00[ASN][1000 genomes]
rs1890125	1.00[ASN][1000 genomes]
rs2225872	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2245073	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2245074	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2255148	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2256009	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2256119	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2265458	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2323665	0.83[AMR][1000 genomes]
rs2485290	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2485491	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2485492	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2785959	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4943546	0.91[ASN][1000 genomes]
rs4943550	0.91[ASN][1000 genomes]
rs4943552	1.00[ASN][1000 genomes]
rs61955036	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67142536	1.00[ASN][1000 genomes]
rs71439740	1.00[ASN][1000 genomes]
rs9315522	1.00[ASN][1000 genomes]
rs9315523	1.00[ASN][1000 genomes]
rs9315524	1.00[ASN][1000 genomes]
rs9315525	0.96[ASN][1000 genomes]
rs9315530	0.81[AMR][1000 genomes]
rs9315532	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9315533	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9532136	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9532137	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9532142	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9532144	0.80[AMR][1000 genomes]
rs9548098	1.00[ASN][1000 genomes]
rs9548099	1.00[ASN][1000 genomes]
rs9548100	1.00[ASN][1000 genomes]
rs9548101	1.00[ASN][1000 genomes]
rs9548102	1.00[ASN][1000 genomes]
rs9548103	1.00[ASN][1000 genomes]
rs9548110	1.00[ASN][1000 genomes]
rs9548111	1.00[ASN][1000 genomes]
rs9548114	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9548117	0.82[AMR][1000 genomes]
rs9548121	0.83[AMR][1000 genomes]
rs9548129	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9548136	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9548159	0.83[AMR][1000 genomes]
rs9548217	1.00[CHB][hapmap]
rs9594241	1.00[ASN][1000 genomes]
rs9594242	1.00[ASN][1000 genomes]
rs9603311	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915901	chr13:38199035-39032633	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv899996	chr13:38459224-38577056	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv899998	chr13:38480878-38582178	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv869125	chr13:38550449-39132813	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38544200-38550800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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