Variant report

Variant	rs2485736
Chromosome Location	chrX:138924869-138924870
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12012817	1.00[YRI][hapmap]
rs17002234	0.90[YRI][hapmap]
rs2094702	0.89[YRI][hapmap]
rs2485726	0.90[YRI][hapmap]
rs2485730	1.00[YRI][hapmap]
rs2491008	1.00[YRI][hapmap]
rs2491012	0.90[YRI][hapmap]
rs2497267	0.90[YRI][hapmap]
rs2497279	1.00[YRI][hapmap]
rs4239992	0.85[YRI][hapmap]
rs4824921	1.00[YRI][hapmap]
rs5908666	1.00[YRI][hapmap]
rs7061310	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532936	chrX:138687855-139384681	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	148 gene(s)	inside rSNPs	diseases
2	nsv491760	chrX:138780768-139283477	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	147 gene(s)	inside rSNPs	diseases
3	nsv917353	chrX:138912620-139283492	Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	146 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:138914400-138931800	Weak transcription	Primary T cells from cord blood	blood
2	chrX:138914600-138926400	Weak transcription	Primary B cells from peripheral blood	blood
3	chrX:138914600-138934400	Weak transcription	Primary hematopoietic stem cells	blood
4	chrX:138917600-138927000	Weak transcription	K562	blood
5	chrX:138920000-138926200	Weak transcription	Liver	Liver
6	chrX:138921600-138927200	Weak transcription	Ovary	ovary
7	chrX:138922200-138926400	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chrX:138924000-138927200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chrX:138924200-138926400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chrX:138924400-138925000	Enhancers	Adipose Nuclei	Adipose
11	chrX:138924400-138925000	Enhancers	Fetal Brain Male	brain
12	chrX:138924400-138925400	Enhancers	Rectal Mucosa Donor 31	rectum
13	chrX:138924400-138928400	Enhancers	Fetal Heart	heart
14	chrX:138924600-138925000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chrX:138924600-138925000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chrX:138924600-138925400	Enhancers	Fetal Kidney	kidney
17	chrX:138924600-138925400	Enhancers	NHLF	lung
18	chrX:138924600-138934600	Weak transcription	Fetal Intestine Small	intestine
19	chrX:138924800-138926400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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