Variant report

Variant	rs2491008
Chromosome Location	chrX:138935332-138935333
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12012817	0.87[ASW][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs17002234	0.87[ASW][hapmap];0.90[YRI][hapmap]
rs2094702	0.87[ASW][hapmap];0.89[YRI][hapmap]
rs2485726	0.87[ASW][hapmap];0.90[YRI][hapmap]
rs2485730	1.00[YRI][hapmap]
rs2485736	1.00[YRI][hapmap]
rs2491012	0.87[ASW][hapmap];0.90[YRI][hapmap]
rs2497267	0.90[YRI][hapmap]
rs2497279	0.87[ASW][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs4239992	0.85[YRI][hapmap]
rs4824921	1.00[YRI][hapmap]
rs5908666	0.87[ASW][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs7061310	0.87[ASW][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532936	chrX:138687855-139384681	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	148 gene(s)	inside rSNPs	diseases
2	nsv491760	chrX:138780768-139283477	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	147 gene(s)	inside rSNPs	diseases
3	nsv917353	chrX:138912620-139283492	Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	146 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:138927400-138960200	Weak transcription	Liver	Liver
2	chrX:138931800-138936800	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chrX:138931800-138939400	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chrX:138932600-138935400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
5	chrX:138933200-138935600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
6	chrX:138933400-138935400	Enhancers	H1 Cell Line	embryonic stem cell
7	chrX:138933800-138935800	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chrX:138933800-138936400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chrX:138934000-138936200	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chrX:138934000-138938600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chrX:138934000-138964600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chrX:138934200-138936400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chrX:138934600-138935400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chrX:138934800-138935400	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chrX:138935000-138935400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chrX:138935000-138935400	Enhancers	Primary monocytes fromperipheralblood	blood
17	chrX:138935000-138935600	Enhancers	Primary neutrophils fromperipheralblood	blood
18	chrX:138935000-138935600	Enhancers	Monocytes-CD14+_RO01746	blood
19	chrX:138935200-138938400	Weak transcription	H9 Cell Line	embryonic stem cell
20	chrX:138935200-138948200	Weak transcription	Fetal Intestine Small	intestine

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