Variant report

Variant	rs2488074
Chromosome Location	chr10:94493739-94493740
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11187142	1.00[ASN][1000 genomes]
rs11187150	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12260097	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2488076	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2488077	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2488079	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2488080	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2488081	1.00[ASN][1000 genomes]
rs2497303	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497308	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497311	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497313	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7086841	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446249	chr10:94374508-94549394	Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94491200-94493800	Weak transcription	Primary B cells from cord blood	blood
2	chr10:94493400-94493800	Weak transcription	K562	blood
3	chr10:94493600-94494600	Enhancers	Primary B cells from peripheral blood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links