Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11187109	0.85[CEU][hapmap]
rs11187111	0.85[CEU][hapmap]
rs11187112	0.85[CEU][hapmap]
rs11187126	0.85[CEU][hapmap]
rs11187142	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12247024	0.85[CEU][hapmap]
rs12256435	0.85[CEU][hapmap]
rs12260097	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12262390	0.85[CEU][hapmap]
rs2488074	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2488076	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2488077	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2488079	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2488080	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2488081	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2497303	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497307	0.81[EUR][1000 genomes]
rs2497308	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497309	0.81[EUR][1000 genomes]
rs2497311	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497312	0.81[EUR][1000 genomes]
rs2497313	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7086841	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446249	chr10:94374508-94549394	Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs11187150	TNKS2	cis	parietal	SCAN
rs11187150	HHEX	cis	cerebellum	SCAN
rs11187150	ZNF518A	cis	parietal	SCAN

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94481200-94488200	Weak transcription	Primary B cells from peripheral blood	blood
2	chr10:94486000-94488800	Weak transcription	Primary B cells from cord blood	blood
3	chr10:94486400-94487400	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr10:94486400-94487400	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr10:94486400-94487600	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr10:94486600-94487200	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr10:94486600-94487400	Enhancers	H9 Cell Line	embryonic stem cell
8	chr10:94486600-94487400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr10:94486600-94487600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr10:94486600-94487800	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr10:94486800-94487200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
12	chr10:94486800-94487200	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr10:94486800-94487200	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr10:94486800-94487200	Bivalent Enhancer	HepG2	liver
15	chr10:94486800-94487400	Enhancers	H1 Cell Line	embryonic stem cell
16	chr10:94486800-94487400	Enhancers	Pancreas	Pancrea
17	chr10:94486800-94487600	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr10:94486800-94488000	Enhancers	K562	blood

Quick Search: