Variant report

Variant	rs7086841
Chromosome Location	chr10:94480502-94480503
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11187142	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187150	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12260097	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2488074	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2488076	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2488077	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2488079	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2488080	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2488081	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2497303	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497307	0.81[EUR][1000 genomes]
rs2497308	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497309	0.81[EUR][1000 genomes]
rs2497311	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497312	0.81[EUR][1000 genomes]
rs2497313	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446249	chr10:94374508-94549394	Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94471200-94481200	Enhancers	Primary B cells from peripheral blood	blood
2	chr10:94477000-94486600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:94477200-94482600	Weak transcription	Pancreas	Pancrea
4	chr10:94479000-94481200	Enhancers	Primary B cells from cord blood	blood
5	chr10:94480000-94480800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr10:94480200-94480800	Bivalent Enhancer	GM12878-XiMat	blood
7	chr10:94480200-94480800	Enhancers	K562	blood
8	chr10:94480400-94480800	Enhancers	Spleen	Spleen

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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