Variant report

Variant	rs2488160
Chromosome Location	chr10:18372418-18372419
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs2250678	0.86[ASN][1000 genomes]
rs2488153	0.80[ASN][1000 genomes]
rs2488154	0.80[ASN][1000 genomes]
rs2488158	0.98[ASN][1000 genomes]
rs2497805	0.80[ASN][1000 genomes]
rs2497806	0.80[ASN][1000 genomes]
rs2497807	0.81[ASN][1000 genomes]
rs2497811	0.80[ASN][1000 genomes]
rs2497820	0.84[ASN][1000 genomes]
rs2497821	0.87[ASN][1000 genomes]
rs2497823	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550039	chr10:18363924-18425519	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv550040	chr10:18365380-18399519	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1045547	chr10:18366749-18397247	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18369000-18374400	Weak transcription	Fetal Lung	lung
2	chr10:18369000-18374600	Weak transcription	Fetal Stomach	stomach
3	chr10:18372400-18372600	Enhancers	Brain Anterior Caudate	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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