Variant report

Variant	rs2497820
Chromosome Location	chr10:18368849-18368850
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs2185765	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2250678	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2488153	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2488154	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2488155	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2488158	0.85[ASN][1000 genomes]
rs2488160	0.84[ASN][1000 genomes]
rs2497801	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2497802	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2497803	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2497805	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2497806	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2497807	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2497811	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2497821	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2497823	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550039	chr10:18363924-18425519	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv550040	chr10:18365380-18399519	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1045547	chr10:18366749-18397247	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18367000-18370000	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr10:18367200-18369000	Enhancers	H9 Cell Line	embryonic stem cell
3	chr10:18367400-18369600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr10:18368000-18369600	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr10:18368000-18370000	Enhancers	Fetal Heart	heart
6	chr10:18368200-18369000	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr10:18368200-18369600	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr10:18368400-18369000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr10:18368400-18369000	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr10:18368400-18369000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr10:18368400-18369000	Enhancers	Fetal Stomach	stomach
12	chr10:18368400-18369000	Enhancers	NHDF-Ad	bronchial
13	chr10:18368400-18370000	Enhancers	Brain Substantia Nigra	brain
14	chr10:18368600-18369000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr10:18368600-18369000	Enhancers	Fetal Lung	lung
16	chr10:18368600-18369600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr10:18368600-18369800	Enhancers	Brain Angular Gyrus	brain
18	chr10:18368600-18369800	Enhancers	Brain Cingulate Gyrus	brain
19	chr10:18368800-18369400	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr10:18368800-18370200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr10:18368800-18370400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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