The 2.0 version of rSNPBase

Variant report

Variant rs2493120
Chromosome Location chr1:179267286-179267287
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:103 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:179263800-179267600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
2 chr1:179263800-179268400 Enhancers Primary B cells from peripheral blood blood
3 chr1:179263800-179304600 Weak transcription Lung lung
4 chr1:179263800-179306400 Weak transcription Gastric stomach
5 chr1:179264000-179271400 Weak transcription Fetal Muscle Trunk muscle
6 chr1:179264000-179279600 Weak transcription Fetal Brain Male brain
7 chr1:179264200-179290200 Weak transcription Aorta Aorta
8 chr1:179264400-179267400 Weak transcription Spleen Spleen
9 chr1:179264400-179267600 Weak transcription Fetal Thymus thymus
10 chr1:179264400-179271400 Weak transcription Left Ventricle heart
11 chr1:179264600-179267800 Weak transcription A549 lung
12 chr1:179264600-179268000 Weak transcription Thymus Thymus
13 chr1:179264600-179268400 Enhancers Primary monocytes fromperipheralblood blood
14 chr1:179264600-179271400 Enhancers Primary T helper memory cells from peripheral blood 2 blood
15 chr1:179264600-179271400 Weak transcription Fetal Stomach stomach
16 chr1:179264600-179271600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
17 chr1:179264600-179271600 Weak transcription Psoas Muscle Psoas
18 chr1:179264600-179271600 Weak transcription Rectal Mucosa Donor 29 rectum
19 chr1:179264600-179272000 Weak transcription Stomach Smooth Muscle stomach
20 chr1:179264600-179272800 Weak transcription Fetal Lung lung
21 chr1:179264600-179273400 Weak transcription Fetal Intestine Small intestine
22 chr1:179264600-179273400 Weak transcription Fetal Muscle Leg muscle
23 chr1:179264600-179274200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
24 chr1:179264600-179275000 Weak transcription Skeletal Muscle Male skeletal muscle
25 chr1:179264600-179278600 Weak transcription Colonic Mucosa Colon
26 chr1:179264600-179281200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
27 chr1:179264600-179292000 Weak transcription Rectal Smooth Muscle rectum
28 chr1:179264600-179304600 Weak transcription Right Ventricle heart
29 chr1:179264600-179310200 Weak transcription Brain Substantia Nigra brain
30 chr1:179264600-179314000 Weak transcription Brain Angular Gyrus brain
31 chr1:179264600-179314000 Weak transcription Brain Inferior Temporal Lobe brain
32 chr1:179264800-179267800 Enhancers Primary T killer memory cells from peripheral blood blood
33 chr1:179264800-179267800 Weak transcription Duodenum Mucosa Duodenum
34 chr1:179264800-179268000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
35 chr1:179264800-179268000 Weak transcription Sigmoid Colon Sigmoid Colon
36 chr1:179264800-179268200 Enhancers Primary T cells from cord blood blood
37 chr1:179264800-179270400 Enhancers Primary T helper cells fromperipheralblood blood
38 chr1:179264800-179271400 Enhancers Primary T helper naive cells from peripheral blood blood
39 chr1:179264800-179271400 Weak transcription Fetal Intestine Large intestine
40 chr1:179264800-179271600 Enhancers Primary T killer naive cells fromperipheralblood blood
41 chr1:179264800-179271600 Weak transcription Skeletal Muscle Female skeletal muscle
42 chr1:179264800-179271600 Weak transcription HMEC breast
43 chr1:179264800-179271800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
44 chr1:179264800-179271800 Weak transcription Muscle Satellite Cultured Cells --
45 chr1:179264800-179272000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
46 chr1:179264800-179272000 Weak transcription Brain Anterior Caudate brain
47 chr1:179264800-179272000 Weak transcription Duodenum Smooth Muscle Duodenum
48 chr1:179264800-179272000 Weak transcription Rectal Mucosa Donor 31 rectum
49 chr1:179264800-179272200 Weak transcription Adipose Nuclei Adipose
50 chr1:179264800-179272200 Weak transcription HSMM muscle

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Last update: Aug 31, 2015