Variant report

Variant rs2500390
Chromosome Location chr1:145001899-145001900
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:95 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:144991400-145004200 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
2 chr1:144991600-145002000 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
3 chr1:144992000-145002400 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
4 chr1:144992600-145007800 Weak transcription HMEC breast
5 chr1:144993800-145002400 Strong transcription Osteobl bone
6 chr1:144995000-145005600 Weak transcription NH-A brain
7 chr1:144995800-145004800 Weak transcription Fetal Intestine Small intestine
8 chr1:144995800-145008600 Weak transcription Placenta Amnion Placenta Amnion
9 chr1:144996600-145008600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
10 chr1:144997400-145002800 Genic enhancers Foreskin Fibroblast Primary Cells skin01 Skin
11 chr1:144997400-145007800 Weak transcription NHEK skin
12 chr1:144998000-145009000 Weak transcription Stomach Mucosa stomach
13 chr1:144998200-145002000 Weak transcription Fetal Brain Male brain
14 chr1:144998600-145002800 Genic enhancers Foreskin Fibroblast Primary Cells skin02 Skin
15 chr1:144998600-145003000 Genic enhancers NHLF lung
16 chr1:144999200-145002600 Weak transcription Pancreas Pancrea
17 chr1:144999200-145002800 Enhancers Psoas Muscle Psoas
18 chr1:144999200-145003400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
19 chr1:144999200-145004200 Weak transcription Liver Liver
20 chr1:144999200-145004400 Enhancers Pancreatic Islets Pancreatic Islet
21 chr1:144999200-145008600 Weak transcription Rectal Smooth Muscle rectum
22 chr1:144999400-145004000 Weak transcription Fetal Heart heart
23 chr1:144999800-145003600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
24 chr1:145000200-145002000 Weak transcription Gastric stomach
25 chr1:145000200-145004400 Weak transcription Fetal Thymus thymus
26 chr1:145000400-145002600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
27 chr1:145000400-145004000 Weak transcription Placenta Placenta
28 chr1:145000400-145004400 Weak transcription Primary T cells fromperipheralblood blood
29 chr1:145000400-145004400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
30 chr1:145000400-145008400 Genic enhancers Muscle Satellite Cultured Cells --
31 chr1:145000400-145010200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
32 chr1:145000600-145004200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
33 chr1:145000600-145008000 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
34 chr1:145000800-145002000 Enhancers Skeletal Muscle Female skeletal muscle
35 chr1:145000800-145002400 Enhancers Skeletal Muscle Male skeletal muscle
36 chr1:145000800-145003800 Weak transcription Primary T killer memory cells from peripheral blood blood
37 chr1:145000800-145004000 Weak transcription Primary T helper cells PMA-I stimulated --
38 chr1:145000800-145004200 Weak transcription Primary T helper naive cells from peripheral blood blood
39 chr1:145000800-145004200 Weak transcription Primary T helper naive cells fromperipheralblood blood
40 chr1:145000800-145004200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
41 chr1:145000800-145004400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
42 chr1:145000800-145006000 Weak transcription ES-I3 Cell Line embryonic stem cell
43 chr1:145000800-145009000 Weak transcription Cortex derived primary cultured neurospheres brain
44 chr1:145000800-145009000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
45 chr1:145000800-145021600 Weak transcription Breast Myoepithelial Primary Cells Breast
46 chr1:145001000-145002000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
47 chr1:145001000-145002000 Weak transcription HUES48 Cell Line embryonic stem cell
48 chr1:145001000-145002000 Weak transcription Sigmoid Colon Sigmoid Colon
49 chr1:145001000-145002600 Weak transcription Brain Substantia Nigra brain
50 chr1:145001000-145003200 Weak transcription Fetal Lung lung

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