Variant report

Variant	rs2510169
Chromosome Location	chr11:105419007-105419008
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10895834	0.84[EUR][1000 genomes]
rs11226791	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11226792	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11226804	0.83[ASN][1000 genomes]
rs2510168	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2510171	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2510175	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2513254	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2513255	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34009389	0.88[AMR][1000 genomes]
rs3758802	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4258350	0.84[EUR][1000 genomes]
rs4277081	0.84[EUR][1000 genomes]
rs71486022	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7482330	0.94[AMR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949337	chr11:104950007-105510193	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105416400-105419600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr11:105417600-105419600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr11:105417800-105419400	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr11:105418200-105419400	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr11:105418200-105419600	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr11:105418400-105419200	Enhancers	Primary hematopoietic stem cells	blood
7	chr11:105418800-105419200	Enhancers	Fetal Brain Female	brain
8	chr11:105418800-105419800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr11:105419000-105419400	Enhancers	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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