Variant report

Variant	rs2513254
Chromosome Location	chr11:105433471-105433472
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10895834	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11226791	0.95[ASN][1000 genomes]
rs11226792	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11226804	0.89[ASN][1000 genomes]
rs2510168	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2510169	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2510171	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2510175	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2513255	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34009389	0.84[ASN][1000 genomes]
rs34548753	0.82[AMR][1000 genomes]
rs3758802	0.89[ASN][1000 genomes]
rs4258350	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4277081	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71486022	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7482330	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949337	chr11:104950007-105510193	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105431400-105433800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links