Variant report

Variant	rs34009389
Chromosome Location	chr11:105490804-105490805
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11226791	0.90[ASN][1000 genomes]
rs11226792	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11226804	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2510168	0.88[AMR][1000 genomes]
rs2510169	0.88[AMR][1000 genomes]
rs2510175	0.84[ASN][1000 genomes]
rs2513254	0.84[ASN][1000 genomes]
rs2513255	0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs34548753	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3758802	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71486022	0.90[ASN][1000 genomes]
rs7482330	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949337	chr11:104950007-105510193	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105484800-105500600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr11:105485800-105491800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr11:105490200-105491000	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr11:105490200-105491200	Enhancers	Brain Substantia Nigra	brain
5	chr11:105490400-105491000	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr11:105490800-105492400	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr11:105490800-105495800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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