Variant report

Variant	rs2510236
Chromosome Location	chr9:136697599-136697600
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:136666679..136669288-chr9:136695747..136697629,2	MCF-7	breast:
2	chr9:136694438..136696917-chr9:136696926..136699565,2	MCF-7	breast:
3	chr9:136697564..136700865-chr9:136704214..136707852,3	MCF-7	breast:
4	chr9:136695961..136698474-chr9:136744886..136747596,2	MCF-7	breast:
5	chr9:136694512..136703388-chr9:136855005..136859658,12	MCF-7	breast:
6	chr9:136695836..136698829-chr9:136733827..136735666,2	MCF-7	breast:
7	chr9:136695295..136698632-chr9:136737582..136741114,3	MCF-7	breast:
8	chr9:136696621..136698733-chr9:136856338..136858438,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000160293	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10114092	1.00[AMR][1000 genomes]
rs10116423	1.00[AMR][1000 genomes]
rs10117330	1.00[AMR][1000 genomes]
rs10821538	1.00[AMR][1000 genomes]
rs10993858	1.00[AMR][1000 genomes]
rs10993859	1.00[AMR][1000 genomes]
rs10993867	1.00[AMR][1000 genomes]
rs10993868	1.00[AMR][1000 genomes]
rs2428119	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2428120	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2428121	1.00[AMR][1000 genomes]
rs2486349	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2486352	1.00[AMR][1000 genomes]
rs2488562	1.00[AMR][1000 genomes]
rs2502733	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2502753	1.00[AMR][1000 genomes]
rs2502764	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2993799	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3003585	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55950463	1.00[AMR][1000 genomes]
rs55977312	1.00[AMR][1000 genomes]
rs56908632	1.00[AMR][1000 genomes]
rs59975587	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73662309	1.00[AMR][1000 genomes]
rs73662310	1.00[AMR][1000 genomes]
rs73662321	1.00[AMR][1000 genomes]
rs73663862	1.00[AMR][1000 genomes]
rs9409867	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894114	chr9:136538798-136779153	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv428546	chr9:136541745-136720872	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv831745	chr9:136593702-136780273	Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv894117	chr9:136600201-136716399	Strong transcription Weak transcription Genic enhancers Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv831746	chr9:136607829-136750740	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv894122	chr9:136632662-136760639	Enhancers Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	nsv1035272	chr9:136665308-136772256	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv894123	chr9:136682408-136852501	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:136658800-136705400	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr9:136659000-136702200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr9:136673200-136705000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr9:136674600-136699000	Weak transcription	Aorta	Aorta
5	chr9:136675200-136728400	Weak transcription	Esophagus	oesophagus
6	chr9:136675400-136703200	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr9:136675400-136709400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr9:136675600-136698000	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr9:136675600-136704800	Weak transcription	Adipose Nuclei	Adipose
10	chr9:136676000-136699800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr9:136677000-136705000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr9:136682200-136701000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr9:136683800-136705000	Weak transcription	NHDF-Ad	bronchial
14	chr9:136684200-136704800	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr9:136686000-136709600	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr9:136686600-136705000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr9:136687600-136705000	Weak transcription	HSMMtube	muscle
18	chr9:136689200-136704800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr9:136691400-136704800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr9:136691400-136705000	Weak transcription	Fetal Kidney	kidney
21	chr9:136691800-136703200	Weak transcription	Colonic Mucosa	Colon
22	chr9:136691800-136704800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr9:136692000-136700600	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr9:136692000-136700600	Weak transcription	Colon Smooth Muscle	Colon
25	chr9:136692000-136704800	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr9:136692000-136704800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr9:136692000-136705000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr9:136692000-136705000	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr9:136692000-136709800	Weak transcription	NH-A	brain
30	chr9:136692200-136698000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr9:136692200-136698200	Weak transcription	Brain Cingulate Gyrus	brain
32	chr9:136692200-136699200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr9:136692200-136699200	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr9:136692200-136699800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr9:136692200-136700600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr9:136692200-136705000	Weak transcription	Left Ventricle	heart
37	chr9:136692200-136705200	Weak transcription	Right Atrium	heart
38	chr9:136692400-136698200	Weak transcription	Right Ventricle	heart
39	chr9:136692400-136700800	Strong transcription	Fetal Intestine Small	intestine
40	chr9:136692400-136704800	Weak transcription	Fetal Lung	lung
41	chr9:136693400-136699600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr9:136693600-136699600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr9:136693600-136699600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr9:136693600-136699600	Strong transcription	Liver	Liver
45	chr9:136693600-136699800	Strong transcription	Fetal Stomach	stomach
46	chr9:136693600-136702200	Strong transcription	HepG2	liver
47	chr9:136693800-136699800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr9:136693800-136700000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr9:136693800-136703600	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr9:136694000-136700000	Strong transcription	Fetal Intestine Large	intestine

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