Variant report

Variant	rs59975587
Chromosome Location	chr9:136701529-136701530
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:136694028..136696242-chr9:136700979..136702982,2	K562	blood:
2	chr9:136700635..136701570-chr9:136738064..136738716,3	MCF-7	breast:
3	chr9:136698753..136701712-chr9:136736999..136741089,4	MCF-7	breast:
4	chr9:136700321..136702669-chr9:136857379..136860221,2	MCF-7	breast:
5	chr9:136700981..136702843-chr9:136704343..136707980,3	MCF-7	breast:
6	chr9:136700961..136707109-chr9:136726164..136730903,8	MCF-7	breast:
7	chr9:136675423..136677000-chr9:136700195..136701998,2	MCF-7	breast:
8	chr9:136699416..136701767-chr9:136738556..136740332,2	MCF-7	breast:
9	chr9:136694512..136703388-chr9:136855005..136859658,12	MCF-7	breast:
10	chr9:136700233..136703130-chr9:136758245..136760331,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000160293	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10114092	1.00[AMR][1000 genomes]
rs10116423	1.00[AMR][1000 genomes]
rs10117330	1.00[AMR][1000 genomes]
rs10821538	1.00[AMR][1000 genomes]
rs10993858	1.00[AMR][1000 genomes]
rs10993859	1.00[AMR][1000 genomes]
rs10993867	1.00[AMR][1000 genomes]
rs10993868	1.00[AMR][1000 genomes]
rs2428119	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2428120	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2428121	1.00[AMR][1000 genomes]
rs2486349	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2486352	1.00[AMR][1000 genomes]
rs2488562	1.00[AMR][1000 genomes]
rs2502733	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2502753	1.00[AMR][1000 genomes]
rs2502764	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2510236	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2993799	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3003585	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55950463	1.00[AMR][1000 genomes]
rs55977312	1.00[AMR][1000 genomes]
rs56908632	1.00[AMR][1000 genomes]
rs73662309	1.00[AMR][1000 genomes]
rs73662310	1.00[AMR][1000 genomes]
rs73662321	1.00[AMR][1000 genomes]
rs73663862	1.00[AMR][1000 genomes]
rs9409867	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894114	chr9:136538798-136779153	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv428546	chr9:136541745-136720872	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv831745	chr9:136593702-136780273	Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv894117	chr9:136600201-136716399	Strong transcription Weak transcription Genic enhancers Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv831746	chr9:136607829-136750740	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv894122	chr9:136632662-136760639	Enhancers Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	nsv1035272	chr9:136665308-136772256	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv894123	chr9:136682408-136852501	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:136658800-136705400	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr9:136659000-136702200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr9:136673200-136705000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr9:136675200-136728400	Weak transcription	Esophagus	oesophagus
5	chr9:136675400-136703200	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr9:136675400-136709400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr9:136675600-136704800	Weak transcription	Adipose Nuclei	Adipose
8	chr9:136677000-136705000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr9:136683800-136705000	Weak transcription	NHDF-Ad	bronchial
10	chr9:136684200-136704800	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr9:136686000-136709600	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr9:136686600-136705000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr9:136687600-136705000	Weak transcription	HSMMtube	muscle
14	chr9:136689200-136704800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr9:136691400-136704800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr9:136691400-136705000	Weak transcription	Fetal Kidney	kidney
17	chr9:136691800-136703200	Weak transcription	Colonic Mucosa	Colon
18	chr9:136691800-136704800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr9:136692000-136704800	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr9:136692000-136704800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr9:136692000-136705000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr9:136692000-136705000	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr9:136692000-136709800	Weak transcription	NH-A	brain
24	chr9:136692200-136705000	Weak transcription	Left Ventricle	heart
25	chr9:136692200-136705200	Weak transcription	Right Atrium	heart
26	chr9:136692400-136704800	Weak transcription	Fetal Lung	lung
27	chr9:136693600-136702200	Strong transcription	HepG2	liver
28	chr9:136693800-136703600	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr9:136696200-136704800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr9:136696200-136704800	Weak transcription	HSMM	muscle
31	chr9:136697400-136702000	Weak transcription	GM12878-XiMat	blood
32	chr9:136697600-136704800	Weak transcription	Osteobl	bone
33	chr9:136697600-136709800	Weak transcription	Primary B cells from cord blood	blood
34	chr9:136698000-136701600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr9:136698400-136718000	Weak transcription	Hela-S3	cervix
36	chr9:136698800-136702400	Weak transcription	Duodenum Mucosa	Duodenum
37	chr9:136698800-136704800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr9:136698800-136705200	Weak transcription	Stomach Smooth Muscle	stomach
39	chr9:136699000-136702000	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr9:136699000-136704400	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr9:136699000-136709600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr9:136699200-136701600	Enhancers	H1 Cell Line	embryonic stem cell
43	chr9:136699200-136708800	Weak transcription	Brain Hippocampus Middle	brain
44	chr9:136699400-136702200	Enhancers	Fetal Muscle Leg	muscle
45	chr9:136699400-136703200	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr9:136699400-136704200	Weak transcription	Monocytes-CD14+_RO01746	blood
47	chr9:136699400-136705200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr9:136699600-136701600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
49	chr9:136699600-136705000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr9:136699600-136705200	Weak transcription	Liver	Liver

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