Variant report

Variant	rs73662309
Chromosome Location	chr9:136730869-136730870
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:136716201..136719069-chr9:136729479..136731369,2	MCF-7	breast:
2	chr9:136700961..136707109-chr9:136726164..136730903,8	MCF-7	breast:
3	chr9:136726221..136733157-chr9:136853321..136860155,11	MCF-7	breast:
4	chr9:136697764..136700285-chr9:136729110..136730934,2	MCF-7	breast:
5	chr9:136730272..136735488-chr9:136855005..136861125,10	MCF-7	breast:
6	chr9:136729185..136731068-chr9:136732644..136734219,2	K562	blood:
7	chr9:136647424..136648976-chr9:136729858..136732826,2	MCF-7	breast:
8	chr9:136729161..136730927-chr9:136820243..136822364,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000160293	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10114092	1.00[AMR][1000 genomes]
rs10116423	1.00[AMR][1000 genomes]
rs10117330	1.00[AMR][1000 genomes]
rs10821538	1.00[AMR][1000 genomes]
rs10993858	1.00[AMR][1000 genomes]
rs10993859	1.00[AMR][1000 genomes]
rs10993867	1.00[AMR][1000 genomes]
rs10993868	1.00[AMR][1000 genomes]
rs2428119	1.00[AMR][1000 genomes]
rs2428120	1.00[AMR][1000 genomes]
rs2428121	1.00[AMR][1000 genomes]
rs2486349	1.00[AMR][1000 genomes]
rs2486352	1.00[AMR][1000 genomes]
rs2488562	1.00[AMR][1000 genomes]
rs2502733	1.00[AMR][1000 genomes]
rs2502753	1.00[AMR][1000 genomes]
rs2502764	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2510236	1.00[AMR][1000 genomes]
rs2993799	1.00[AMR][1000 genomes]
rs3003585	1.00[AMR][1000 genomes]
rs55950463	1.00[AMR][1000 genomes]
rs55977312	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56908632	1.00[AMR][1000 genomes]
rs59975587	1.00[AMR][1000 genomes]
rs73662310	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73662321	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73663862	1.00[AMR][1000 genomes]
rs9409867	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894114	chr9:136538798-136779153	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv831745	chr9:136593702-136780273	Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv831746	chr9:136607829-136750740	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv894122	chr9:136632662-136760639	Enhancers Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv1035272	chr9:136665308-136772256	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv894123	chr9:136682408-136852501	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	nsv894124	chr9:136716399-136870787	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
8	nsv894125	chr9:136723520-136931957	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:136711400-136737800	Weak transcription	NH-A	brain
2	chr9:136721400-136738600	Weak transcription	HUVEC	blood vessel
3	chr9:136726200-136735400	Weak transcription	Aorta	Aorta
4	chr9:136726600-136735200	Weak transcription	Gastric	stomach
5	chr9:136727800-136738400	Weak transcription	HepG2	liver
6	chr9:136727800-136739000	Weak transcription	NHLF	lung
7	chr9:136728600-136731400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr9:136729000-136731200	Weak transcription	Brain Angular Gyrus	brain
9	chr9:136729200-136734400	Weak transcription	Primary B cells from cord blood	blood
10	chr9:136729600-136731000	Strong transcription	NHEK	skin
11	chr9:136729600-136731800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr9:136729600-136732200	ZNF genes & repeats	Fetal Stomach	stomach
13	chr9:136729600-136734800	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr9:136729600-136735000	Weak transcription	Left Ventricle	heart
15	chr9:136729600-136737600	Weak transcription	HSMM	muscle
16	chr9:136729600-136780000	Weak transcription	Stomach Smooth Muscle	stomach
17	chr9:136729800-136731000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr9:136729800-136732000	Weak transcription	Liver	Liver
19	chr9:136729800-136762600	Weak transcription	Right Ventricle	heart
20	chr9:136730000-136731200	ZNF genes & repeats	Hela-S3	cervix
21	chr9:136730000-136731400	ZNF genes & repeats	Primary B cells from peripheral blood	blood
22	chr9:136730000-136731400	ZNF genes & repeats	Fetal Brain Female	brain
23	chr9:136730000-136731600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr9:136730000-136731600	ZNF genes & repeats	GM12878-XiMat	blood
25	chr9:136730000-136735200	Weak transcription	Right Atrium	heart
26	chr9:136730000-136735400	Weak transcription	Spleen	Spleen
27	chr9:136730000-136736800	Weak transcription	HMEC	breast
28	chr9:136730000-136737000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr9:136730000-136738400	Weak transcription	Fetal Intestine Large	intestine
30	chr9:136730000-136739200	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr9:136730200-136731000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr9:136730200-136731400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr9:136730200-136731400	ZNF genes & repeats	Fetal Intestine Small	intestine
34	chr9:136730200-136733800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr9:136730200-136734800	Weak transcription	Pancreas	Pancrea
36	chr9:136730400-136731200	ZNF genes & repeats	Fetal Lung	lung
37	chr9:136730400-136731400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr9:136730600-136731000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr9:136730600-136731200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
40	chr9:136730600-136731200	ZNF genes & repeats	Fetal Muscle Trunk	muscle
41	chr9:136730600-136732000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr9:136730800-136731200	Strong transcription	Osteobl	bone
43	chr9:136730800-136731400	Enhancers	Placenta Amnion	Placenta Amnion
44	chr9:136730800-136731600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
45	chr9:136730800-136738400	Weak transcription	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links