Variant report
| Variant | rs2516719 |
|---|---|
| Chromosome Location | chr6:30223720-30223721 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:30182145..30184666-chr6:30223310..30225294,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:36)
| rs_ID | r2[population] |
|---|---|
| rs1045251 | 0.82[AFR][1000 genomes] |
| rs1264616 | 0.82[AFR][1000 genomes] |
| rs2023477 | 0.89[AFR][1000 genomes] |
| rs2023478 | 0.89[AFR][1000 genomes] |
| rs2072106 | 0.96[ASN][1000 genomes] |
| rs2097773 | 0.85[AFR][1000 genomes] |
| rs2516697 | 0.80[AFR][1000 genomes] |
| rs2516699 | 0.89[AFR][1000 genomes] |
| rs2516700 | 0.89[AFR][1000 genomes] |
| rs2516701 | 0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs2516702 | 0.89[AFR][1000 genomes] |
| rs2516704 | 0.89[AFR][1000 genomes] |
| rs2516705 | 0.89[AFR][1000 genomes] |
| rs2516706 | 0.89[AFR][1000 genomes] |
| rs2516707 | 0.88[AFR][1000 genomes] |
| rs2516710 | 0.89[AFR][1000 genomes] |
| rs2516713 | 0.89[AFR][1000 genomes] |
| rs2516718 | 0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2523744 | 0.89[AFR][1000 genomes] |
| rs2523745 | 0.89[AFR][1000 genomes] |
| rs2523746 | 0.89[AFR][1000 genomes] |
| rs2523747 | 0.89[AFR][1000 genomes] |
| rs2523750 | 0.89[AFR][1000 genomes] |
| rs261943 | 0.82[AFR][1000 genomes] |
| rs261948 | 0.82[AFR][1000 genomes] |
| rs261949 | 0.82[AFR][1000 genomes] |
| rs28360021 | 0.81[AFR][1000 genomes] |
| rs2844752 | 0.81[AFR][1000 genomes] |
| rs2844761 | 0.87[AFR][1000 genomes] |
| rs2844763 | 0.88[AFR][1000 genomes] |
| rs2844765 | 0.88[AFR][1000 genomes] |
| rs6904208 | 0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6907399 | 0.92[ASN][1000 genomes] |
| rs7767653 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9380168 | 0.82[AFR][1000 genomes] |
| rs962899 | 0.89[AFR][1000 genomes] |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs2516719 | HCG18 | Cis_1M | lymphoblastoid | RTeQTL |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:30218800-30226000 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
| 2 | chr6:30222800-30226000 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
