The 2.0 version of rSNPBase

Variant report

Variant rs2516707
Chromosome Location chr6:30229013-30229014
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:69 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:30228000-30229800 Weak transcription Placenta Amnion Placenta Amnion
2 chr6:30228200-30229400 Enhancers Primary Natural Killer cells fromperipheralblood blood
3 chr6:30228200-30231200 Weak transcription Ovary ovary
4 chr6:30228200-30232000 Weak transcription HSMMtube muscle
5 chr6:30228200-30234200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
6 chr6:30228200-30237400 Weak transcription Aorta Aorta
7 chr6:30228400-30229200 Enhancers Brain Angular Gyrus brain
8 chr6:30228400-30229200 Enhancers Brain Cingulate Gyrus brain
9 chr6:30228400-30229200 Enhancers Rectal Mucosa Donor 29 rectum
10 chr6:30228400-30229600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
11 chr6:30228400-30230000 Genic enhancers Primary B cells from peripheral blood blood
12 chr6:30228400-30230000 Weak transcription Colonic Mucosa Colon
13 chr6:30228400-30230400 Weak transcription Small Intestine intestine
14 chr6:30228400-30230800 Weak transcription NH-A brain
15 chr6:30228400-30231400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
16 chr6:30228400-30231400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
17 chr6:30228400-30231400 Weak transcription Muscle Satellite Cultured Cells --
18 chr6:30228400-30231400 Weak transcription HMEC breast
19 chr6:30228400-30231400 Weak transcription NHDF-Ad bronchial
20 chr6:30228400-30231600 Weak transcription HSMM muscle
21 chr6:30228400-30231800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
22 chr6:30228400-30232400 Weak transcription Brain Germinal Matrix brain
23 chr6:30228400-30232400 Weak transcription Gastric stomach
24 chr6:30228400-30232800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
25 chr6:30228400-30236800 Weak transcription Brain Hippocampus Middle brain
26 chr6:30228400-30238000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
27 chr6:30228400-30238200 Weak transcription Left Ventricle heart
28 chr6:30228400-30239600 Weak transcription HepG2 liver
29 chr6:30228400-30239800 Weak transcription Colon Smooth Muscle Colon
30 chr6:30228600-30229200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
31 chr6:30228600-30229200 Enhancers Brain Dorsolateral Prefrontal Cortex brain
32 chr6:30228600-30229400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
33 chr6:30228600-30230800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
34 chr6:30228600-30230800 Weak transcription Brain Anterior Caudate brain
35 chr6:30228600-30230800 Weak transcription Pancreas Pancrea
36 chr6:30228600-30232200 Weak transcription Fetal Brain Male brain
37 chr6:30228600-30233000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
38 chr6:30228600-30233200 Weak transcription Skeletal Muscle Male skeletal muscle
39 chr6:30228600-30233200 Weak transcription Thymus Thymus
40 chr6:30228600-30233800 Weak transcription Cortex derived primary cultured neurospheres brain
41 chr6:30228600-30234400 Weak transcription Fetal Brain Female brain
42 chr6:30228600-30236600 Weak transcription Brain Substantia Nigra brain
43 chr6:30228800-30229200 Enhancers iPS DF 19.11 Cell Line embryonic stem cell
44 chr6:30228800-30229200 Flanking Active TSS Primary T cells fromperipheralblood blood
45 chr6:30228800-30229200 Weak transcription GM12878-XiMat blood
46 chr6:30228800-30229800 Strong transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
47 chr6:30228800-30230000 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
48 chr6:30228800-30230000 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
49 chr6:30228800-30230400 Strong transcription Fetal Stomach stomach
50 chr6:30228800-30230600 Weak transcription Lung lung

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015