Variant report

Variant	rs9391807
Chromosome Location	chr6:30227583-30227584
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:30226094..30227681-chr6:30293299..30296159,2	MCF-7	breast:
2	chr6:30225449..30228967-chr6:30292795..30296377,4	K562	blood:
3	chr6:30226682..30228906-chr6:30311932..30314057,2	MCF-7	breast:
4	chr6:30225542..30228363-chr6:30311426..30313496,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000241370	Chromatin interaction
ENSG00000204599	Chromatin interaction
ENSG00000231074	Chromatin interaction
ENSG00000270604	Chromatin interaction

Extended variants
information (count: 66 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs1045251	0.83[ASN][1000 genomes]
rs12174823	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1264616	0.83[ASN][1000 genomes]
rs1473102	0.83[ASN][1000 genomes]
rs1579218	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1579219	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2023476	0.80[ASN][1000 genomes]
rs2023477	0.92[ASN][1000 genomes]
rs2023478	0.80[ASN][1000 genomes]
rs2057727	0.83[ASN][1000 genomes]
rs2097773	0.81[ASN][1000 genomes]
rs2240058	0.91[EUR][1000 genomes]
rs2285798	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2394779	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2394780	0.81[ASN][1000 genomes]
rs2516699	0.80[ASN][1000 genomes]
rs2516700	0.80[ASN][1000 genomes]
rs2516702	0.80[ASN][1000 genomes]
rs2516704	0.80[ASN][1000 genomes]
rs2516705	0.80[ASN][1000 genomes]
rs2516706	0.82[ASN][1000 genomes]
rs2516707	0.80[ASN][1000 genomes]
rs2516710	0.80[ASN][1000 genomes]
rs2516713	0.80[ASN][1000 genomes]
rs2523737	0.83[ASN][1000 genomes]
rs2523744	0.80[ASN][1000 genomes]
rs2523745	0.80[ASN][1000 genomes]
rs2523746	0.80[ASN][1000 genomes]
rs2523747	0.80[ASN][1000 genomes]
rs2523750	0.80[ASN][1000 genomes]
rs261943	0.83[ASN][1000 genomes]
rs261948	0.83[ASN][1000 genomes]
rs261949	0.80[ASN][1000 genomes]
rs28360021	0.83[ASN][1000 genomes]
rs28360023	0.83[ASN][1000 genomes]
rs2844752	0.83[ASN][1000 genomes]
rs2844761	0.83[ASN][1000 genomes]
rs2844763	0.82[ASN][1000 genomes]
rs2844765	0.83[ASN][1000 genomes]
rs2894145	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3778624	0.81[ASN][1000 genomes]
rs3778626	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs5030611	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56183729	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6912239	0.83[ASN][1000 genomes]
rs6912495	0.83[ASN][1000 genomes]
rs7452694	0.81[ASN][1000 genomes]
rs9295843	0.83[ASN][1000 genomes]
rs9295844	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9357095	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9366755	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9368628	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9368632	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9368633	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9380173	0.91[EUR][1000 genomes]
rs9380174	0.80[ASN][1000 genomes]
rs9391679	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9391762	0.89[EUR][1000 genomes]
rs9391806	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9393999	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9394000	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9394001	0.83[ASN][1000 genomes]
rs9394002	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9394003	0.80[ASN][1000 genomes]
rs962899	0.80[ASN][1000 genomes]
rs974962	0.91[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9391807	TRIM26	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30226600-30228000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
2	chr6:30226600-30229000	Active TSS	Brain Inferior Temporal Lobe	brain
3	chr6:30226800-30227600	Active TSS	Fetal Brain Female	brain
4	chr6:30226800-30227800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
5	chr6:30226800-30227800	Active TSS	Stomach Smooth Muscle	stomach
6	chr6:30226800-30228000	Active TSS	Right Atrium	heart
7	chr6:30226800-30228200	Active TSS	Breast Myoepithelial Primary Cells	Breast
8	chr6:30226800-30228200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:30226800-30228200	Active TSS	Brain Anterior Caudate	brain
10	chr6:30226800-30228200	Active TSS	Brain Cingulate Gyrus	brain
11	chr6:30226800-30228200	Active TSS	A549	lung
12	chr6:30226800-30228400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
13	chr6:30226800-30228400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
14	chr6:30226800-30228400	Active TSS	Duodenum Smooth Muscle	Duodenum
15	chr6:30226800-30228400	Active TSS	HSMM	muscle
16	chr6:30226800-30228600	Enhancers	Fetal Brain Male	brain
17	chr6:30226800-30228600	Enhancers	Fetal Heart	heart
18	chr6:30226800-30228800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:30227000-30227600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr6:30227000-30227600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
21	chr6:30227000-30227600	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr6:30227000-30227600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
23	chr6:30227000-30227600	Bivalent/Poised TSS	Fetal Stomach	stomach
24	chr6:30227000-30227600	Bivalent/Poised TSS	NHEK	skin
25	chr6:30227000-30227800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr6:30227000-30227800	Active TSS	Primary B cells from cord blood	blood
27	chr6:30227000-30227800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
28	chr6:30227000-30227800	Active TSS	Fetal Lung	lung
29	chr6:30227000-30227800	Bivalent/Poised TSS	Monocytes-CD14+_RO01746	blood
30	chr6:30227000-30228000	Active TSS	Fetal Kidney	kidney
31	chr6:30227000-30228000	Active TSS	Gastric	stomach
32	chr6:30227000-30228000	Active TSS	Right Ventricle	heart
33	chr6:30227000-30228000	Active TSS	Skeletal Muscle Female	skeletal muscle
34	chr6:30227000-30228200	Active TSS	H9 Cell Line	embryonic stem cell
35	chr6:30227000-30228200	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr6:30227000-30228200	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
37	chr6:30227000-30228200	Active TSS	Aorta	Aorta
38	chr6:30227000-30228200	Flanking Active TSS	Liver	Liver
39	chr6:30227000-30228200	Active TSS	Colonic Mucosa	Colon
40	chr6:30227000-30228200	Active TSS	Pancreatic Islets	Pancreatic Islet
41	chr6:30227000-30228200	Active TSS	Ovary	ovary
42	chr6:30227000-30228200	Active TSS	HSMMtube	muscle
43	chr6:30227000-30228200	Active TSS	NH-A	brain
44	chr6:30227000-30228400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr6:30227000-30228400	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
46	chr6:30227000-30228400	Active TSS	Psoas Muscle	Psoas
47	chr6:30227000-30228400	Active TSS	NHLF	lung
48	chr6:30227200-30227600	Bivalent/Poised TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr6:30227200-30227600	Bivalent/Poised TSS	Primary neutrophils fromperipheralblood	blood
50	chr6:30227200-30227600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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