Variant report

Variant	rs1579219
Chromosome Location	chr6:30224305-30224306
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:30182145..30184666-chr6:30223310..30225294,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1045251	0.80[ASN][1000 genomes]
rs12174823	0.91[EUR][1000 genomes]
rs1264616	0.80[ASN][1000 genomes]
rs1473102	0.80[ASN][1000 genomes]
rs1579218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2023477	0.89[ASN][1000 genomes]
rs2057727	0.80[ASN][1000 genomes]
rs2240058	0.91[EUR][1000 genomes]
rs2285798	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2394779	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2523737	0.80[ASN][1000 genomes]
rs261943	0.80[ASN][1000 genomes]
rs261948	0.80[ASN][1000 genomes]
rs28360021	0.80[ASN][1000 genomes]
rs28360023	0.80[ASN][1000 genomes]
rs2844752	0.80[ASN][1000 genomes]
rs2844761	0.80[ASN][1000 genomes]
rs2844765	0.80[ASN][1000 genomes]
rs2894145	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3778626	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs5030611	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56183729	0.91[EUR][1000 genomes]
rs6912239	0.80[ASN][1000 genomes]
rs6912495	0.80[ASN][1000 genomes]
rs9295843	0.80[ASN][1000 genomes]
rs9295844	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9357095	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9366755	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9368628	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9368632	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9368633	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9380173	0.91[EUR][1000 genomes]
rs9391679	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9391762	0.89[EUR][1000 genomes]
rs9391806	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9391807	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9393999	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9394000	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9394001	0.80[ASN][1000 genomes]
rs9394002	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs974962	0.91[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1579219	HCG18	Cis_1M	lymphoblastoid	RTeQTL
rs1579219	TRIM26	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30218800-30226000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:30222800-30226000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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