Variant report

Variant	rs2394779
Chromosome Location	chr6:30252606-30252607
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs1045251	0.83[ASN][1000 genomes]
rs12174823	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1264616	0.83[ASN][1000 genomes]
rs1473102	0.83[ASN][1000 genomes]
rs1579218	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1579219	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2023476	0.80[ASN][1000 genomes]
rs2023477	0.93[ASN][1000 genomes]
rs2023478	0.80[ASN][1000 genomes]
rs2057727	0.83[ASN][1000 genomes]
rs2097773	0.81[ASN][1000 genomes]
rs2240058	0.91[EUR][1000 genomes]
rs2285798	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2394780	0.81[ASN][1000 genomes]
rs2516699	0.80[ASN][1000 genomes]
rs2516700	0.80[ASN][1000 genomes]
rs2516702	0.80[ASN][1000 genomes]
rs2516704	0.80[ASN][1000 genomes]
rs2516705	0.80[ASN][1000 genomes]
rs2516706	0.81[ASN][1000 genomes]
rs2516707	0.80[ASN][1000 genomes]
rs2516710	0.80[ASN][1000 genomes]
rs2516713	0.80[ASN][1000 genomes]
rs2523737	0.83[ASN][1000 genomes]
rs2523744	0.80[ASN][1000 genomes]
rs2523745	0.80[ASN][1000 genomes]
rs2523746	0.80[ASN][1000 genomes]
rs2523747	0.80[ASN][1000 genomes]
rs2523750	0.80[ASN][1000 genomes]
rs261943	0.83[ASN][1000 genomes]
rs261948	0.83[ASN][1000 genomes]
rs261949	0.80[ASN][1000 genomes]
rs28360021	0.83[ASN][1000 genomes]
rs28360023	0.83[ASN][1000 genomes]
rs2844752	0.83[ASN][1000 genomes]
rs2844761	0.83[ASN][1000 genomes]
rs2844763	0.82[ASN][1000 genomes]
rs2844765	0.83[ASN][1000 genomes]
rs2894145	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3778624	0.81[ASN][1000 genomes]
rs3778626	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs5030611	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56183729	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6912239	0.83[ASN][1000 genomes]
rs6912495	0.83[ASN][1000 genomes]
rs7452694	0.81[ASN][1000 genomes]
rs9295843	0.83[ASN][1000 genomes]
rs9295844	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9357095	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9366755	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9368628	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9368632	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9368633	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380173	0.91[EUR][1000 genomes]
rs9380174	0.80[ASN][1000 genomes]
rs9391679	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9391762	0.89[EUR][1000 genomes]
rs9391806	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9391807	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9393999	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9394000	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9394001	0.83[ASN][1000 genomes]
rs9394002	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9394003	0.80[ASN][1000 genomes]
rs962899	0.80[ASN][1000 genomes]
rs974962	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv884062	chr6:30237454-30256838	ZNF genes & repeats Weak transcription Enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2394779	TRIM26	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30247400-30253000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:30247600-30262400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:30248400-30253400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:30248400-30255600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:30248600-30254000	ZNF genes & repeats	Liver	Liver
6	chr6:30250600-30252800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
7	chr6:30251200-30253000	ZNF genes & repeats	Brain Hippocampus Middle	brain
8	chr6:30251600-30252800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
9	chr6:30252200-30262600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
10	chr6:30252600-30253000	ZNF genes & repeats	Brain Angular Gyrus	brain
11	chr6:30252600-30253000	ZNF genes & repeats	Psoas Muscle	Psoas

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