Variant report

Variant	rs2894145
Chromosome Location	chr6:30242904-30242905
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1045251	0.81[ASN][1000 genomes]
rs12174823	0.91[EUR][1000 genomes]
rs1264616	0.81[ASN][1000 genomes]
rs1473102	0.81[ASN][1000 genomes]
rs1579218	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1579219	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2023477	0.92[ASN][1000 genomes]
rs2057727	0.81[ASN][1000 genomes]
rs2097773	0.80[ASN][1000 genomes]
rs2240058	0.91[EUR][1000 genomes]
rs2285798	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2394779	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2394780	0.80[ASN][1000 genomes]
rs2523737	0.81[ASN][1000 genomes]
rs261943	0.81[ASN][1000 genomes]
rs261948	0.81[ASN][1000 genomes]
rs28360021	0.81[ASN][1000 genomes]
rs28360023	0.81[ASN][1000 genomes]
rs2844752	0.81[ASN][1000 genomes]
rs2844761	0.81[ASN][1000 genomes]
rs2844763	0.81[ASN][1000 genomes]
rs2844765	0.81[ASN][1000 genomes]
rs3778624	0.80[ASN][1000 genomes]
rs3778626	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs5030611	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56183729	0.91[EUR][1000 genomes]
rs6912239	0.81[ASN][1000 genomes]
rs6912495	0.81[ASN][1000 genomes]
rs7452694	0.80[ASN][1000 genomes]
rs9295843	0.81[ASN][1000 genomes]
rs9295844	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9357095	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9366755	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9368628	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9368632	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9368633	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9380173	0.91[EUR][1000 genomes]
rs9391679	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9391762	0.89[EUR][1000 genomes]
rs9391806	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9391807	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9393999	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9394000	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9394001	0.81[ASN][1000 genomes]
rs9394002	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs974962	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv884061	chr6:30234627-30250450	Weak transcription ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv884062	chr6:30237454-30256838	ZNF genes & repeats Weak transcription Enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2894145	HCG18	Cis_1M	lymphoblastoid	RTeQTL
rs2894145	TRIM26	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30233200-30243600	Weak transcription	HSMMtube	muscle
2	chr6:30237200-30243400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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